trnag-ccc_6


Basic Information

Item Value
gene id trnag-ccc_6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11572827 ~ 11572897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-ccc_6
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCCCATTCTTGcgacccgggttcgattcccgggcGGCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ccc_6 True 71 tRNA 0.62 1 11572827 11572897

Neighbor

gene id symbol gene type direction distance location
trnai-aau_17 NA coding upstream 23639 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 24648 11548108 ~ 11548179 (+)
snorc c20h2orf82 coding upstream 28102 11535133 ~ 11544725 (+)
gigyf2 gigyf2,LOC103130361,LOC103143041 coding upstream 39266 11498327 ~ 11533561 (+)
itm2cb itm2c,LOC107569273,LOC107679406 coding upstream 93276 11473845 ~ 11479551 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding downstream 23802 11596699 ~ 11622845 (+)
LOC113533522 NA coding downstream 843613 12416510 ~ 12428531 (+)
LOC113533470 NA coding downstream 1209640 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 1395417 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 1431897 13004794 ~ 13014554 (+)
G318426 NA non-coding upstream 168771 11403264 ~ 11404056 (+)
G318331 NA non-coding upstream 403688 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding upstream 453000 11112953 ~ 11119827 (+)
G318273 NA non-coding upstream 563681 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 585251 10959921 ~ 10987576 (+)
G318647 NA non-coding downstream 201046 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 226061 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 260411 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 297870 11870767 ~ 11870966 (+)
G318697 NA non-coding downstream 452311 12025208 ~ 12025443 (+)
G318439 NA other upstream 103328 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 108058 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 838739 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 1003920 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 1009833 10536431 ~ 10562994 (+)
G319170 NA other downstream 1192158 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1448245 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2264536 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2507352 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2813341 14386238 ~ 14466753 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000118_00215816_00217163 NA coding CI01000118 null 215305 ~ 217465 (+)
rainbow trout (Oncorhynchus mykiss) trnag-ccc NA coding NC_048569.1 CM023223.2 22730228 ~ 22730298 (-)
eurasian perch (Perca fluviatilis) trnag-ccc_1 NA coding NC_053132.1 CM020929.1 8601178 ~ 8601248 (+)
striped catfish (Pangasianodon hypophthalmus) trnag-ccc NA coding NC_047597.1 CM018543.1 11591335 ~ 11591405 (+)
striped catfish (Pangasianodon hypophthalmus) trnag-ccc_1 NA coding NC_047602.1 CM018548.1 29487973 ~ 29488043 (+)
tiger barb (Puntius tetrazona) trnag-ccc_3 NA misc NC_056712.1 CM032081.1 437885 ~ 437955 (+)
tiger barb (Puntius tetrazona) trnaa-ugc_55 NA coding NC_056704.1 CM032073.1 13442536 ~ 13442607 (-)
mexican tetra (Astyanax mexicanus) trnag-ccc NA coding NC_035900.1 CM008303.1 18897302 ~ 18897372 (+)
mexican tetra (Astyanax mexicanus) trnag-ccc_1 NA coding NC_035913.1 CM008316.1 13480969 ~ 13481039 (+)