G318332 (mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615)


Basic Information

Item Value
gene id G318332
gene name mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11112953 ~ 11119827 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377005
TACTACAATCACCAGCGGTAAAGTGTATTATGAAAAGAACATGCTAACATGCTGGTTAACAAGGACCAGAAGCATGAACATGATCTCAGTAGCACAGGATAACTGCTTAGGGGATTTGGTCTAATAGTTACTCTAGTATACTGTAATAAATTCCTGTAATTTCTCTGTGTAGGACAGCAGAGCAAGTGACAATCAAGCTAAACGTGCAGGTAAACTTGTTATGTGAGGCAACAGAAAGACACTTACAGTGCAGTCCAAATGTCAAACTGCACTACTGAGATCAGATTTCCATTTCATCACTTAAAGACTAATCCAATTTTCTCAAATAATTCATATAAGTTCAAATATTATGTTATTAACTGAAATAGCAGTGACGATAACAAAGCACTATTTGACTACACcagttcagttcatttcagGCAGCCACATTGTTAACACTGTTTATTAGGAGTATTAAATGTTATCATTTGAGTGAAATAGAGTtgactccagaattattggcacccttccaGAAAATCTGcccaattaaataaacaaaatcaaggacatcatggaaaaaaaagttataagaTTCAAAAAGACAAAGAGCAGCCCAAAGATCAGAGTTTAGTTGATTCATGTGCAGTTTAGTTGATTCCTTGGGTTTTGAAATCAACATATGAGCTGTAGGGAAGGGTTGCATGAAAGAAGTTCTTCCTGATGGCAGCCAACAAACATACTgaacttcactggaactacagCTACAACGAAAATCAAACTTTTTGGTCATCAGCACTAATagcatgtttggtgaaaaaaacagGACTGTAGAATATGGTGCAGAATATGGATCACTGATGCTTTGGGCATATTTATTATGAGGATTAATGGCTTAATGAGTTCTTTTAAATACCAATGAGTACATAAGGGGATCAATAAGTTCTACACTCCAAGTTGCACAGAAGTGTTTGCAGGAGCACAAACTTAAATGTTTGCAGTGGCTATCTCAGGCTCCGGATTTGAACCCAGTTGAAAACCTGTATTGAAACCTAACCATATAAAGGAGCTTCTGCAAGAAGGAGTGGGCCAAGATCCCTCTACATGTGTCTCCAGCATCGTTAGACATGACACTAAGAGATGCTGGTGTTCCCTCTAGAGACGGCTCACCCAATATTAATTATGAGGGAGCCAATAATCCTGAAGCCAGTATTACTCAGAAATAAATTCACATTAATTAAACCTTGTTCTTGCAGTGccataaaataaaactacacaGAATCTACATAAAATGTCACCCCTTTTGCATGTAtcttacatttattatattaatcttttttcacattttcatgaaAAGTGCCAAGTTCTGGAGTTGcctgccattttattttaatgaaaagtgtgtgtgaatataacGTTCAGATATGCAGTACACTCACctgccactttaataagaacacctgtacacctgctcattcattcaattatctaatcagccaatcatgtggcagcagcacaatgcataaaataatgcagatacacgTCAAGAGTTTCataacaaacatcagaatgaggaaaagtgatctctgtgactttaactgtggtatggatgttggtaccagacattctggtttgagtatttcagaaactgctgatctcctgggattttcacacacaacaatcgctagagtttacacagaatgatgtgaaaaaatctcaggcagaaacaccttgttgatgtgagaggtcagaggagaatggccagacaggaagtctacagtaacacaaataaccactctttacaattgtggtgagcagaacagTATCACAGCATGGCAAACCTTTGCGACGGATGGGCTCcaacagcagaggaccacatcaggttccagtcCTATCAGCAAGAACAGGCTCCAGTGGACACAAGCTCACTGACAGGAATATGACCAGGCgatatttttccaatcttcagctatctagtttcagtgagcctgtgctgCATGATTGGTTGatcagataattgcatgaaggAGCAGGGGTACaagtgttcctgttaaagtgatCAATATATCCTGAAATCATCAAATGTGGATTCCTTGAACagtttcaaaattttttttaaataatttacctCAATTTGATGCAAATTTAGATAATGATCAATGGCATAaaatgttgcattaatttttgatGATGAACGAAAAACAGTTGGTAGTGCACTCAGTCTTTTAGACCCTTATTATAAATactcatttcaatataaacTGCATTACTGTGcagaattttattaatgatCTCAGCACATTCACTCTATAGAGAAAGTGCACATCATAAACCGCctgcaaaatacacaaaaactgGTGGCTGTGGAACAAGGTCAAGTAAACAGACCCGCACTTAGCTGTATCAGCGTGCATGTGTTGATTTTACACTGCATTAATATGAGCTGTGTAGAATTTGGCGTGTAAGCAGCCGAAAGGGAGGAAGGTTAGAACACCTACCCACACTCGCTGCAGGAGTCATGCACAATATTGAGCCTGCCCATCATGCATTGCAACAGGAAGTGGATTGGAAAAAGGGGAGAAGAATCAAATCAGCCCATCACAAGGTTGGTTAGAttaaagagagacaaacaaagGACggcaaaacataaaacattacagGGAATCATTCACAAAAAAACTGATTCGTTGTGGAATGTGTGATCTACAGTTGGGgagtgagaggggtgtgtgaaGGTGTTGGGTGCAGACAATAACAAGCCTTTACAACACTGATCACCTGTTTAAAACCAACACTAGCAACCTACATCATGTGTCTCAGTGTGATAATCTACAATCAGACCCCTATTTGTCCTTTCATTGGGgcgaaaaaaaaccccaactgTAGATCTGAATATAAATTACTGTCAAACGTGACAGTCAGCTCCggaattattagcacccttgatggtggttaaaaaaaggttaataaTTGTGATATAGTGTTTTGGTTACATTTTTCCCCTAGAATAAATCAAATTTCTTTTCAAAGCTAGATTACTTTCCAGTAACTCAAGAGCTGACTGTACATATTGTATGAGCAATCACGAATTGTAGAGAGAGTAGTGCATTTGATACACAGTACTCATGTCATATAACTGGAACTATAgactaaatgtttaaaattccTTGTGCAGCCaaatactcaaaaaaaaaaaaaaaatacactgataaaaacatttcttcattGTAACATGAAACTCAAACCTGTGTCAAAATTGATTTCAGGAGATTTGAATAATTGTattgatgtaaatattaatatacttGATATTCATAACAATATCTTTGCTCAACTATGCCTGCTGAACAGATTTTCTTATGGTGAGAGTCATTTCATATTGAGAGTGATTCTGTACAATTTACAATCATGAGCtgccactgctgtgtgtgtactgcatgTGTATGCCGTAAGCTGCagataagtgtgtgttgtttgttctGATTGGCAGGTCAGGCTTGCTGGCCTTGTGCTAAAAGGTCAGATTAGATTAGCTCAGGCCCCTACCTGAAGGAATAAACGCAGCCTGCTGCTGAAACTGCATGTTGGCCAGCGCCTGTTGGTACTGCAGCATGCCAGCATTGAACATGGTGGTGGCACCGTTGGTTTTCTCGAGGGCTGGTCTCTTTGGCAAAGGAGGAATTACGCTATGAGGAAGGCCCTGCTTGGGCAGGTCAAAGGTGGCCTCGAGGGGTCGCTTCAGTGATTTGACAGCCGTCTTAATTAGCAGGCAGCGAGCACATGATGGCAATGGGCCAATGGGGTTCATGGCCGCGGTGGCTGTGGCCTGGTTCACCTGGTGCTGTGCTGCTTTGATCTTGGCCTGCAGGTGTGCAGGAGGATGGAAATATTTGCACTTGTCCCGTGAGCAGCGACTCTTGATGTAGTCCATACACACGGTGACGGTGTTCTCGCTGGAGTCTATCATGGTGCTGTCAGCCGGGTGAGCAAATCTGCAGTCTGTCTCACCGCGAGAGCAATTACCACGCTGGTACTCGCGgcacacc

Function

symbol description
mbnl1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including blood; eye; gonad; heart; and swim bladder. Orthologous to human MBNL1 (muscleblind like splicing regulator 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377005 True 4022 lncRNA 0.40 3 11112953 11119827

Neighbor

gene id symbol gene type direction distance location
map6d1 LOC108280841 coding upstream 215202 10880241 ~ 10897751 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding upstream 234297 10861959 ~ 10878656 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding upstream 252657 10838755 ~ 10860296 (+)
mul1a LOC108280869 coding upstream 393804 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 408461 10655409 ~ 10704492 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 67971 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 118412 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 188194 11308021 ~ 11315878 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding downstream 204300 11324127 ~ 11342139 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding downstream 237743 11357570 ~ 11374709 (+)
G318273 NA non-coding upstream 103807 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 125377 10959921 ~ 10987576 (+)
LOC117595750 NA non-coding upstream 201347 10841640 ~ 10911606 (+)
G318426 NA non-coding downstream 283437 11403264 ~ 11404056 (+)
G318647 NA non-coding downstream 654116 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 679131 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 713481 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 750940 11870767 ~ 11870966 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 378865 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 544046 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 549959 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 1135037 9958993 ~ 9977916 (+)
G317390 NA other upstream 1697789 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 280057 11399884 ~ 11464769 (+)
G318439 NA other downstream 347472 11467299 ~ 11469499 (+)
G319170 NA other downstream 1645228 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1901315 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2717606 13837433 ~ 13897914 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location