G319755 (LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296)


Basic Information

Item Value
gene id G319755
gene name LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13589599 ~ 13590316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378685
ACCCACTCAAGCTCCTCCATATATTagtatttatatctatttacaTATTGTACAAAGCTGTAAGAAGCAATCTGTCATTTCAGCTGGGTTCCAGTCCAGATTTTACAGGATACCACACACCATTCATTAGTGCTATTGATTTTGCAGTAAAGTAGCAAAACCTCATGAAACCAACCCTAAAAGGTTTTCATAATCAGCAAGCCACATTCTTTCTTTGGCAGATATCTGTTTTTCAGCTACTTCCTACATCTGAATTGGAGTtctttaaatacacaatatatacagatTTATGATCTCAGTGGCAACCACAGCTTCCTGCCACCATGTCATCGTACTGCTTTAGAACTACATTCTCATCATCATCGAAGTACAGGAGGTTGATGGAGAAGAGCTTGTCGGGCACACAACATGGTGTCTCTATGCCTTTGGTAAGCTTGAGTGCGTTGATGATGGACTGCACAGTGGCGTGGTTTGTGGGTCTCATGTTTTGGCCCAGAGGAAAGGGACAGGACCCTTTACAGTGGTATGCATTGTAGCCACGGGGAGATACGATCCACCCAGACCAGCCAATCTCCTCAAAGTCGACGTACAGTGGCAGTCTTTGGCACGGCTTCCTATCTGGGTCTTCGTCATAGTCAAGGGAGCGAGCACTACGATGCCCAGGCCCTGGGAGAGTCAGGCTGGGCAGAAGGAGCTTGGGGCCAGCTAGTGAATCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378685 True 718 lncRNA 0.46 1 13589599 13590316

Neighbor

gene id symbol gene type direction distance location
LOC113533215 LOC108280868 coding upstream 2524 13571709 ~ 13587075 (+)
LOC113533157 LOC108280702,LOC108433088 coding upstream 24396 13437035 ~ 13565203 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding upstream 163633 13422324 ~ 13425966 (+)
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding upstream 178788 13390167 ~ 13410811 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding upstream 284162 13299508 ~ 13305437 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding downstream 46149 13636465 ~ 13658131 (+)
LOC113533233 piezo2,LOC108414168 coding downstream 130650 13720966 ~ 13807258 (+)
rab12 rab12,LOC107696134,LOC107750912 coding downstream 230349 13820665 ~ 13834815 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding downstream 342330 13932646 ~ 13947792 (+)
ankrd12 ankrd12,LOC108280287 coding downstream 359410 13949726 ~ 13985056 (+)
G319415 NA non-coding upstream 78872 13505106 ~ 13510727 (+)
LOC117599983 NA non-coding upstream 168216 13418555 ~ 13421383 (+)
G319382 NA non-coding upstream 177992 13363825 ~ 13411607 (+)
G319342 NA non-coding upstream 283456 13239147 ~ 13306143 (+)
G319340 NA non-coding upstream 344329 13202033 ~ 13245270 (+)
G319867 NA non-coding downstream 266649 13856965 ~ 13894441 (+)
LOC117595740 NA non-coding downstream 314211 13904527 ~ 13910280 (+)
G319886 NA non-coding downstream 318547 13908863 ~ 13909635 (+)
LOC117595739 NA non-coding downstream 321255 13911571 ~ 13919146 (+)
G320003 NA non-coding downstream 427625 14017941 ~ 14018154 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 435072 13021142 ~ 13154527 (+)
G319170 NA other upstream 786580 12765055 ~ 12803019 (+)
G318439 NA other upstream 2120100 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 2124830 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2855511 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 247117 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 489933 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 795922 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1047465 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1236926 14827242 ~ 14828778 (+)

Expression


Co-expression Network