ly97.3 (LOC108280687)


Basic Information

Item Value
gene id ly97.3
gene name LOC108280687
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14827242 ~ 14828778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379509
AAGCAGGCAGGAAGAAACAAGAGATATGGTCAGATATAAAAGGTGAAGACTTCTGAGTCTCTAGCAGATTTGAGACGGAAAGCTACGGCGTACTGGTCACACTCTATTTGTACTCAGTTTGCATTTCAGCAGAAAAATGAGAAGCCTGGTTTTTGCCCTCGTTCTGATACTACTGGTAGCCAGCGGGACGGCTCTGGAGTGTTACCATTGCCAGCCCAAGAAGGCAGGTGGGGCATGTCAGATCACAAAGCTGACCTGTCCTGCTGAAAAAGACACCTGCGTCTCAGTCAAGTTCACCAGATCCCCATTTGGACACTACCAGAGGTGCACGGCCATGGCTGACTGTGAGTTTCTGAAGCTGAACGCCTACATGAATGTCAACTGCTGCCAGAATGACCTCTGTAACACCCTGTGATCCAACTGGCCTTTGACCTTTCACACTGCCAATATCCATCCATGTCTAGAATGTTTTAGAAGTTTGTGGATAATGGTTAACATTCTAACAGGAAAgactcaaataaaaaataaataatatgcatg
>XM_026925724.2
CTGTTTACACAGCAGAGGAGTAAAAGCAGGCAGGAAGAAACAAGAGATATGGTCAGATATAAAAGGTGAAGACTTCTGAGTCTCTAGCAGATTTGAGACGGAAAGCTACGGCGTACTGGTCACACTCTATTTGTACTCAGTTTGCATTTCAGCAGAAAAATGAGAAGCCTGGTTTTTGCCCTCGTTCTGATACTACTGGTAGCCAGCGGGACGGCTCTGGAGTGTTACCATTGCCAGCCCAAGAAGGCAGGTGGGGCATGTCAGATCACAAAGCTGACCTGTCCTGCTGAAAAAGACACCTGCGTCTCAGTCAAGTTCACCAGATCCCCATTTGGACACTACCAGAGGTGCACGGCCATGGCTGACTGTGAGTTTCTGAAGCTGAACGCCTACATGAATGTCAACTGCTGCCAGAATGACCTCTGTAACACCCTGTGATCCAACTGGCCTTTGACCTTTCACACTGCCAATATCCATCCATGTCTAGAATGTTTTAGAAGTTTGTGGATAATGGTTAACATTCTAACAGGAAAgactcaaataaaaaataaataatatgcatgaaattca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379509 False 540 TUCP 0.46 4 14827265 14828771
XM_026925724.2 True 570 mRNA 0.45 4 14827242 14828778

Neighbor

gene id symbol gene type direction distance location
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 22436 14778222 ~ 14804806 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding upstream 198393 14602769 ~ 14628849 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 232921 14550309 ~ 14594321 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding upstream 339859 14481676 ~ 14487383 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 376803 14438363 ~ 14450439 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 289715 15118493 ~ 15139852 (+)
LOC113533638 apcdd1,LOC108280926 coding downstream 346997 15175775 ~ 15191239 (+)
ncstn ncstn coding downstream 402769 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 413251 15242029 ~ 15248003 (+)
nectin4b LOC108280452 coding downstream 426412 15255190 ~ 15268619 (+)
G320386 NA non-coding upstream 155573 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 266629 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 368233 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 370785 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 373291 14438716 ~ 14453951 (+)
G320797 LOC108280451 non-coding downstream 395093 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 481826 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 511788 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 633076 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 715119 15543897 ~ 15546092 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 160734 14637781 ~ 14666508 (+)
rab31 rab31 other upstream 360489 14386238 ~ 14466753 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 700230 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 929328 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1672715 13021142 ~ 13154527 (+)
LOC113533366 NA other downstream 234943 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 253460 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 420737 15249515 ~ 15253555 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 470283 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 737776 15566554 ~ 15570478 (+)

Expression


Co-expression Network