LOC113533366


Basic Information

Item Value
gene id LOC113533366
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15063721 ~ 15066371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379658
GTGGGAACTTGCACATCAGCTTTATTTAAAGGAGGAAAGATAAACTGGTGGAACTCAGAACTGGTTCACAGTCAAAGCTCAGAGACTACTTTCTCCTTTACTGTACTCTCAAACATTGAAGAATAATGAAGACTCTGTTCCTGACTCTGGTTCTTGCCTTGATGCTGATGAGTGGTTCTGCTCTGAAATGCAACAACTGTGTTCCACTTAATGGTGGCAAATGTACTACCACCATTGAAACCTGCGGCTATAAAAAAGACGCCTGTATCTCTGCTCGATTCACCATCTACCCCTATACCTATTTCAGGAGATGCATCAGTATGTCAGACTGCCTCATTCTACAGGCCAATTCCAACATTGTAGCCCGATGCTGTCAGAGGGACCTCTGCAATTAAGATAATGATCTTTTTATTGTAACTgttgttttctgtcattttactTTTCAATTATATATTCAGCAACATCAGTAGTATATTCGGTTCTGTATCTGGGTCTGTTTTTACTTAAGCAAAGCCTGAAAACCCTGTActgaaaaaatgcattttaaataaagtctttTCCAG
>XM_026925483.2
AGGTGAAAGTCCATAGCTCCTGTGAAATCCAGGAGGGTGGGAACTTGCACATCAGCTTTATTTAAAGGAGGAAAGATAAACTGGTGGAACTCAGAACTGGTTCACAGTCAAAGCTCAGAGACTACTTTCTCCTTTACTGTACTCTCAAACATTGAAGAATAATGAAGACTCTGTTCCTGACTCTGGTTCTTGCCTTGATGCTGATGAGTGGTTCTGCTCTGAAATGCAACAACTGTGTTCCACTTAATGGTGGCAAATGTACTACCACCATTGAAACCTGCGGCTATAAAAAAGACGCCTGTATCTCTGCTCGATTCACCATCTACCCCTATACCTATTTCAGGAGATGCATCAGTATGTCAGACTGCCTCATTCTACAGGCCAATTCCAACATTGTAGCCCGATGCTGTCAGAGGGACCTCTGCAATTAAGATAATGATCTTTTTATTGTAACTgttgttttctgtcattttactTTTCAATTATATATTCAGCAACATCAGTAGTATATTCGGTTCTGTATCTGGGTCTGTTTTTACTTAAGCAAAGCCTGAAAACCCTGTActgaaaaaatgcattttaaataaagtctttTCCAGCAgcaa

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU379658 False 563 lncRNA 0.39 4 15063757 15066365
XM_026925483.2 True 605 mRNA 0.40 4 15063721 15066371

Neighbor

gene id symbol gene type direction distance location
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 258915 14778222 ~ 14804806 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding upstream 434872 14602769 ~ 14628849 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 469400 14550309 ~ 14594321 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding upstream 576338 14481676 ~ 14487383 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 613282 14438363 ~ 14450439 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 52122 15118493 ~ 15139852 (+)
LOC113533638 apcdd1,LOC108280926 coding downstream 109404 15175775 ~ 15191239 (+)
ncstn ncstn coding downstream 165176 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 175658 15242029 ~ 15248003 (+)
nectin4b LOC108280452 coding downstream 188819 15255190 ~ 15268619 (+)
G320386 NA non-coding upstream 392052 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 503108 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 604712 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 607264 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 609770 14438716 ~ 14453951 (+)
G320797 LOC108280451 non-coding downstream 157500 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 244233 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 274195 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 395483 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 477526 15543897 ~ 15546092 (+)
ly97.3 LOC108280687 other upstream 234943 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 397213 14637781 ~ 14666508 (+)
rab31 rab31 other upstream 596968 14386238 ~ 14466753 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 936709 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 1165807 13837433 ~ 13897914 (+)
LOC113533365 LOC108280254 other downstream 15867 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 183144 15249515 ~ 15253555 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 232690 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 500183 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 559431 15625802 ~ 15682276 (+)

Expression


Co-expression Network