nectin4b (LOC108280452)


Basic Information

Item Value
gene id nectin4b
gene name LOC108280452
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15255190 ~ 15268619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925029.2
CCCCACGCGAGCGAACAGGTGCGCACCTAAAGTTTCACCTGTGTGGTAGAGCGCGAGCGCGTTGGAGGTTATATGTAGGTGTCGGTGTCGGTGTGTTCATTGCGGCTTGTACTCCGTgaggtgattaaaaaaacaactggaAATGTTAGGTTAATTTTGAAGAATTTGTTTGTGTTGCGTTTGAGGacgttttattttcttctttggaAACGTGTTCACTTTTCTATGGCTAACAGAAGAACTGAGGTGTCCGACTACTGGAGATACAGTGAGGTTTTAATGAACACAATGACCTAGGCTAATTTAGGCTAATTTTTAAAGTGCCATATATTATAAGAAACTagacagtgaaataaacaaaacaaaacaaaaagtagtTTATGTATCTACAAATATATCGTATTTAAAACTGGTTATTTGGCAAGTAGCttatttaattcttaaaaagttGGACCAAATGGAGGAAATGAAGAAAACGTCAAACCCAGCCTGCTTTGCCTTGTTACTAACAGCAGTAATTGcctgtgtgtgtggcgAGTTTGTTCAACCCCCTCCGTCCTTGGCCCTGCTCTCCTTTGCCGAGGAGGAGACTCGATTGCCATGCGAGTTTAAACCACAGGACGGTGTCAGGGTGGTACAGGTGACCTGGTCTACAGAAAAGAGCAATGGTGTCAAGGAGCAGATCATCACCAGACACATGACAGAGGGGCTTCAAGagtttCCTACCTTTGCAGGCCGTGTGCGCTTCACAAGTTCTGATCCGATTAAAGACTCAACGCTGTTGATTCTGAGCACAAGGGAGTCGGATCAAGCCACGTACACCTGCCACATCTCCACTTTTCCTTCAGGGAACTTCGAGAGACAAATCAGCCTTACTGTCTGGAGGATTCCCATCTCCACACTGGAAACGGTCATCCTTGAGGAGGGTCAGTCATTCCGAGTGGCTGCCACATGCCGTGCGATTGGCCTTCCTCCACCACGCCTCTCCTGGGACACTGATGTCCCTGGCCAGTCACAGAACAGGAGCTCAGAGGATGGGGTTGTCACCTCCCAGTACTCGCTGCACCCTCTGCGCAGCATGAATGGCCGCAAACTGGACTGCCTGGTGTGGCACCCTGCTCTAGAGCGCCCCCGCAGGCTGAGCAGCACACTGGTCGTGCACTttccTCCTGACGCTACGGTTTCTGGTTATGATCAGAGCTGGTCAGTTGATCGGAAGGGAGCTGAACTCAAGTGCGAGGGTGTAGGAAATCCTCAACCACACAACTTCACCTGGACCAGGAAGGGCGGGGTTTTGCCCAAGGATGTATCTGTGGAGGGGAACAGGCTCATTTTCACTCGTCCCCTAAATAAAACGGATGAAGGAGTGTACGAATGTGAGGCCATAAACTCAGTGGGATCGGTGAAGACAGAGGTTAATGTCAAGATCCCAGAGGCCACCAAATCTTCCCAGCTCGAGGCCTCTTTCAACAACCTCCTCCTTATCATAGTGGGTGGAGCTGCTGGGGCTTTAGTAGTTGTCATGACAATTATCATCCTTTTGGTTACCTGCCACCATAGACGCAGGACCAGGAAACTTAAAAGGGAGCTCAGCGAGAAAAAgGAGGAGATCAATAATCTTTCAAGACAGACCTCTATGAGGAGACTTAACTCAGTCAGTACTGACCCCAGGATACAGACTGAAGAATCCACCCTCATCAGGATGGACTCTCCTGTAAAAAACAGTGTCTTTTCTCTAGAGGAGAATTCCACCATATGTGAGCAGAGGGATGGGTTTGGAGAAGACGACTACGACAGCCTCGGCCGTCCAGCCATCTTCCGGTCTTACCACTCAGAGCGCGGGAGCGGGAggaggaaagagacagaggtgGAGAAACAAGACCGTGTTCAAAGAGTGGCAACCTTCATAAAGAACAGTAATATGACTTTGGATGCAGATCTTCGCCTGGAACAGAGCCTGCCACCCTTGTCCATTAGCTCAGGCGCATCAAGAGAAGGAGGGACAGAAAAAGACGTATGGGGCCAGAGAGAAGGCATGCcagagggagaggagggagaATGCACCTCAGACTCGTATCAGATCTCAGAGGCACTCTCGAACCACTTCCACTACAGCAATGGCTTCCTCAGGCCAAAACCTCACCCAAACGCTATAATACTGCACCCACGTGGCCAGCTCATATAATGAAGCAAAAGTATTTCTACATGGCATGTCATTCCTGCGATCTATTCAGGTCACCAGTGATGAGCTTTGTGGTCCAGTGAAGCTAATCCTGCTTGCTGCTTCATCTGACCAATGAATTCATATTATACTCCTTGGAGCACATGTGTTTATACCATAAGCAGGTTAGTACATATCGAGACTACTGGACACCTCAGCTTTCAGCTCTACCCACAGGCCTCTCATGGGTCATCTACCAGCAGGCTACAAGTCCAGATGTGGATACATCAACAGATTTAAGCAGACCAACAACCTGTTAAAAGCCTGAGCTGATGAATGCATCTAAATGCGAATTAGCACCACTTATGCAGCAGTTCCTCAGTTGTGCCTGAGTTTGGAAAATTTCCTGACTGAGTGCAGAAGTAGCATTAAGTTAATATTACCATTTAAAATTCAACAGTTgattcattcagttcattcagaaaacaaaataaaccttCATCTATACACCTTACTCAGAACAGCATAAACTTTTGAAATCTGTTCAGAAGAGGTAAATAATCAGCTTGTTAATTAACCAGTTACTTTCACAATATAATTCCTTGCATATATTTTGCATCATGCCACATGCTGGCCAAAGTggtcaaaaatttaaaaagatttcttcttacaaaaaaaacaaacaaacaaaaaaa
>XM_034314546.1
CCCCACGCGAGCGAACAGGTGCGCACCTAAAGTTTCACCTGTGTGGTAGAGCGCGAGCGCGTTGGAGGTTATATGTAGGTGTCGGTGTCGGTGTGTTCATTGCGGCTTGTACTCCGTgaggtgattaaaaaaacaactggaAATGTTAGGTTAATTTTGAAGAATTTGTTTGTGTTGCGTTTGAGGacgttttattttcttctttggaAACGTGTTCACTTTTCTATGGCTAACAGAAGAACTGAGGTGTCCGACTACTGGAGATACAGTGAGGTTTTAATGAACACAATGACCTAGGCTAATTTAGGCTAATTTTTAAAGTGCCATATATTATAAGAAACTagacagtgaaataaacaaaacaaaacaaaaagtagtTTATGTATCTACAAATATATCGTATTTAAAACTGGTTATTTGGCAAGTAGCttatttaattcttaaaaagttGGACCAAATGGAGGAAATGAAGAAAACGTCAAACCCAGCCTGCTTTGCCTTGTTACTAACAGCAGTAATTGcctgtgtgtgtggcgAGTTTGTTCAACCCCCTCCGTCCTTGGCCCTGCTCTCCTTTGCCGAGGAGGAGACTCGATTGCCATGCGAGTTTAAACCACAGGACGGTGTCAGGGTGGTACAGGTGACCTGGTCTACAGAAAAGAGCAATGGTGTCAAGGAGCAGATCATCACCAGACACATGACAGAGGGGCTTCAAGagtttCCTACCTTTGCAGGCCGTGTGCGCTTCACAAGTTCTGATCCGATTAAAGACTCAACGCTGTTGATTCTGAGCACAAGGGAGTCGGATCAAGCCACGTACACCTGCCACATCTCCACTTTTCCTTCAGGGAACTTCGAGAGACAAATCAGCCTTACTGTCTGGAGGATTCCCATCTCCACACTGGAAACGGTCATCCTTGAGGAGGGTCAGTCATTCCGAGTGGCTGCCACATGCCGTGCGATTGGCCTTCCTCCACCACGCCTCTCCTGGGACACTGATGTCCCTGGCCAGTCACAGAACAGGAGCTCAGAGGATGGGGTTGTCACCTCCCAGTACTCGCTGCACCCTCTGCGCAGCATGAATGGCCGCAAACTGGACTGCCTGGTGTGGCACCCTGCTCTAGAGCGCCCCCGCAGGCTGAGCAGCACACTGGTCGTGCACTttccTCCTGACGCTACGGTTTCTGGTTATGATCAGAGCTGGTCAGTTGATCGGAAGGGAGCTGAACTCAAGTGCGAGGGTGTAGGAAATCCTCAACCACACAACTTCACCTGGACCAGGAAGGGCGGGGTTTTGCCCAAGGATGTATCTGTGGAGGGGAACAGGCTCATTTTCACTCGTCCCCTAAATAAAACGGATGAAGGAGTGTACGAATGTGAGGCCATAAACTCAGTGGGATCGGTGAAGACAGAGGTTAATGTCAAGATCCCAGAGGCCACCAAATCTTCCCAGCTCGAGGCCTCTTTCAACAACCTCCTCCTTATCATAGTGGGTGGAGCTGCTGGGGCTTTAGTAGTTGTCATGACAATTATCATCCTTTTGGTTACCTGCCACCATAGACGCAGGACCAGGAAACTTAAAAGGGAGCTCAGCGAGAAAAAgGAGGAGATCAATAATCTTTCAAGACAGACCTCTATGAGGAGACTTAACTCAGTCAGTACTGACCCCAGGATACAGACTGAAGAATCCACCCTCATCAGGATGGACTCTCCTGTAAAAAACAGTGTCTTTTCTCTAGAGGAGAATTCCACCATATGTGAGCAGAGGGATGGGTTTGGAGAAGACGACTACGACAGCCTCGGCCGTCCAGCCATCTTCCGGTCTTACCACTCAGAGCGCGGGAGCGGGAggaggaaagagacagaggtgGAGAAACAAGACCGTGTTCAAAGAGTGGCAACCTTCATAAAGAACAGTAATATGACTTTGaaagaaaaaaaagaaaggcggtgaaggaacaactgtttatagctgctataaaGATGCAGATCTTCGCCTGGAACAGAGCCTGCCACCCTTGTCCATTAGCTCAGGCGCATCAAGAGAAGGAGGGACAGAAAAAGACGTATGGGGCCAGAGAGAAGGCATGCcagagggagaggag

Function

NR:

description
PREDICTED: nectin-4-like

GO: NA

KEGG:

id description
K06593 PVRL4; poliovirus receptor-related 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925029.2 True 2856 mRNA 0.46 11 15255190 15268619
XM_034314546.1 False 2105 mRNA 0.49 12 15255190 15267816

Neighbor

gene id symbol gene type direction distance location
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding upstream 7187 15242029 ~ 15248003 (+)
ncstn ncstn coding upstream 14662 15231547 ~ 15240528 (+)
LOC113533638 apcdd1,LOC108280926 coding upstream 63951 15175775 ~ 15191239 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding upstream 115338 15118493 ~ 15139852 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 450384 14778222 ~ 14804806 (+)
si:dkeyp-68b7.12 arhgap30 coding downstream 12622 15281241 ~ 15292624 (+)
si:dkeyp-68b7.5 LOC108280921 coding downstream 24156 15292775 ~ 15297536 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding downstream 45246 15313865 ~ 15320984 (+)
tpgs1 tpgs1 coding downstream 52842 15321461 ~ 15326058 (+)
sf3a2 sf3a2 coding downstream 64083 15332702 ~ 15337978 (+)
G320797 LOC108280451 non-coding upstream 29118 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 583521 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 694577 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 796181 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 798733 14455383 ~ 14456457 (+)
G320843 NA non-coding downstream 41985 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 71947 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 193235 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 275278 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 302075 15570694 ~ 15571089 (+)
fcer1gl LOC100304589 other upstream 1635 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 153729 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 188819 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 426412 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 588682 14637781 ~ 14666508 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 30442 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 297935 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 357183 15625802 ~ 15682276 (+)
G321088 NA other downstream 600397 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 661328 15929947 ~ 15936773 (+)

Expression


Co-expression Network