tpgs1 (tpgs1)


Basic Information

Item Value
gene id tpgs1
gene name tpgs1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15321461 ~ 15326058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925661.2
TTGGGATTGGTGGAGATTGGCGCGTGACCTTACGAACGCCGCAATTGCGCATGTCCGCAGCGGTGTCCATAGCAACACTGTTTCATTACCTGCGGATGTCTAGCATACCAGCTAGCATGAATCAAAATAAACCAGAGCTCGTTTTATCTCGTATATTTTAGCTAAATGTATTATCGGGTAACTTTAGTGATTAGTCCAGCACTGTATTATAAGGTTTAAAGTTTGTACTAATGGCTGAAAAGAGGCGGTCAGGGGTCGCTGCGGACCCCAAATCAGCCAAAGCCGAGAGCGATGAGGAGTTTCTGTCCCAGGCCGGGGTGGGCGCGCTGCTCCGGGGCGCGCTGCTGAAGCTGGTGGAGGCCCGACCGGAGGATCCGATAGGATTTCTGGCTGAGCATTTCACTAACGAGGCGTCGGAGACTGAGAGCAGTGGAGGAGGTGATGGAGGAGATGGTGATGGAGGaagagatggagatggaaaaTATCAGGACGCgcaggaggagcagcagctgaACAAGGCGCTCTGGCATCTGAGCTCAGCGCATCACTCacagagATCTGCCTTCAACAACAACATCCGTGTGGCTTATGATCTGCTTAGTCAGTGCGGCTCCGCCCAGCGCGTACCTGGTGGAGTCCAGGGCCGACTCTACACTGAGATGctgcggtgtgtgtgtagtgacagTGGCCTGTCGGAGACAGCGGCTGCCCCGCTCCTGCATCACCTGCGGTGCCATGATTACGAGGTTGTGCCCTTTGAGCTCTTCCGGCAGGCGGTGCTTACGTGCGCAGCGTTCTCCGAGTATGTACGCAGAGCACGGTGCCTGTATGCTGACGTGGCATGCTGTCCTGAGCGGCCTGCGGAACGGGAATTATGTGATGCTGTCCTCAACGCTCTGCGAGAGGCGCTTGACACCTCACATGGGCCTGACGCCACACGTTACCTAGAGGCCAGTGCCAAGATCTCACCTGCTGAGCTGGCGCGGACCATGGCCAAGACACGAGGTGCCAGCAGGGAGCAGGAAGGCCCGAGCATGGACATGCGTGAGTTTGAGGACGCTGCTGCAGCACTCTTTATAGCCAGGGTGCGAGTGCTTAACTGAGTTAGAATGCAGATAAAGTCAGCTGATTAGGATTGAAGTGTTGCCAGTGAGCCGTGTGCTCCTCTAGTTCATAACAAGTGCATTTGGGCTGAACGGTCTGACATCAGAACATGTACATAACTCCTCACATGTCTCCATGTTCTGTTCTTAGAAACAGTATTCACTCTCACTACacatacatttaacatttttcagctctctgtaagTCAAACACCCACCAgatttgttgatgagagaggtcagaagagaatggccagactggtttgagctgacaggaaggctaaatcaaataaccactatTTACAGCATGATTCTTTTGATGCAATTATCAACCATAAATCCTAAATTATTTAAACTTGGTTGAATAATATAAATCTGCAGTTGCTAACCCCAGCACAGTATTTTAACCAGTGTTGTTACTTCTTTTCCCCAGCAGGAGGAGCACGACATAATTTCTCATACACAAACTGCTGTTTTAGTTCAGAATTTTAATCTTGTTCTTGTTACTTGATGAgtagaaacttgtttaaagtGAAAGCAGCTCTGAGTGATTTGAGGAAATTATGGAAGCAGATGTGTTCATGGACAAATTTCTCTAGTAGGTGATAAATTTATGCCTGTATTCATTTTGCTAGTGCAATGAGAATGTTTTAATGCtaatatattcttttaaaaatatattcaataaaAGACACAAAGGCTTGGGTGAATTTTTCAATACCTAAAACTGAAAGACTTCCGAATCTCACTCTGAGTATAGCTTCCCGTTTAGTTCTTGAAGTGAGCTGACACTACTCACTTCAAGCTTAAATACTGAGCTATTACAATCCTACCAATCCAGTCTgtaattaaatgtgtatatacattcaTTAATTATATACGattctgtaaaaatgtgttgaaatttggaaaactgatactgatactcaCAGCCTAGTTACCTTCTATTAGAACTTCCTAATTTCACTAAATGAGTTTAGCTATTGATTTTGCAGCTTCTCTAATGGGAACTGTAATTTAAGGAAGCTGATCCAGATCAGCCATTTGAGAAAGGACACTCATTTTACCACAGAGCTATTTTTGGCTATGCCTTTAGCCATTAGTTAATGTGTTGCTAAGGTTATCAGTATTGCTCTTTTAATAGAGCAGCCCTGGGACACATTAGGTGCAACAGGAATGAATCAGTCCGAGCATGAGGCACCCATTTTTTACGTACTATTTGCACAAATAAACCTCCATATTTCTCTTGAGAGGCTTTCTGCACAACAGAAACCACACAATCCTTTTGTTTTGCTCCTTCTGTATCACAAGTGAAGTCACGTGTCTCCACGGAcaacagacaggaagtgagaagGAGAAGAATCAATTTCCATTGTGAGCTCGTTCTGCGGTTTGCTGTAGATCCGTGCCAGAAGAGGCGGATGCACTACTGCACACGTTATCAAACCTAACGAGAATCCGTGTGTAAATAATTCAGCAGGGTGTTTGTTACCAGATCATCCTCACCGGCCCGGCACAAAAGCCAGACTACTGGGTTCACATCATTGGGACTATTTCCAGTGGAATGTCAGCAGTGGTAATCCCTTCAGTGTCGTCTGGACCCCGTCTCAAGCACGTCTGTCCCATCTGCTTATCTTCTGTGATAAAGGGCTTCACAATGGACGTCATGTAATGCTGCACTGATCGAATGATCCGCCATATTGTCTGCTAGAGCTGCTTGTTTTTATTAAGCAGTTACAGCACATGATTAGAGAGAGTTTAGAAGAGAAACAACTTCAGAGGAATAAACTTTTTAAGGATGTAAAGACAGGGTATTATAagaaaactgaattaattaacaATGTCGATCCCAGTTGGCAAACGATCCAGAAGTGCTACCTATTATTTtcccagtatttttttttttttcatttttgttttatggcTTGGGACAGCACTGTGCATTTCTTTAGGAATGTGATGCATGGTACTGTTCAGAAGTcttgtaaagcaaagatgccttccaaaaataaatgaactgtttCTACATATAATAAATTGGCTACAAGGAGTGGTAGGTAA

Function

symbol description
tpgs1 Predicted to enable microtubule binding activity. Predicted to be involved in protein polyglutamylation. Is expressed in female organism. Orthologous to human TPGS1 (tubulin polyglutamylase complex subunit 1).

NR:

description
tubulin polyglutamylase complex subunit 1

GO: NA

KEGG:

id description
K16581 TPGS1; tubulin polyglutamylase complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925661.2 True 3164 mRNA 0.45 2 15321461 15326058

Neighbor

gene id symbol gene type direction distance location
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding upstream 477 15313865 ~ 15320984 (+)
si:dkeyp-68b7.5 LOC108280921 coding upstream 23925 15292775 ~ 15297536 (+)
si:dkeyp-68b7.12 arhgap30 coding upstream 28837 15281241 ~ 15292624 (+)
nectin4b LOC108280452 coding upstream 52842 15255190 ~ 15268619 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding upstream 73458 15242029 ~ 15248003 (+)
sf3a2 sf3a2 coding downstream 6644 15332702 ~ 15337978 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding downstream 86680 15412738 ~ 15460090 (+)
pias4b LOC108280250 coding downstream 177575 15503633 ~ 15511913 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding downstream 188354 15514412 ~ 15521221 (+)
tcf3a LOC100304646 coding downstream 208864 15534922 ~ 15563785 (+)
G320843 NA non-coding upstream 10652 15310604 ~ 15310809 (+)
G320797 LOC108280451 non-coding upstream 95389 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 649792 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 760848 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 862452 14458672 ~ 14459009 (+)
G320848 NA non-coding downstream 14508 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 135796 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 217839 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 244636 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 269966 15596024 ~ 15596226 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 18173 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 67906 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 220000 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 255090 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 492683 14827242 ~ 14828778 (+)
LOC113533167 NA other downstream 240496 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 299744 15625802 ~ 15682276 (+)
G321088 NA other downstream 542958 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 603889 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 774475 16100533 ~ 16111089 (+)

Expression


Co-expression Network