jund (jund,LOC108280549)


Basic Information

Item Value
gene id jund
gene name jund,LOC108280549
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16100533 ~ 16111089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925364.2
TGAAATGACATAATGGAATTTTCTGGGATAGAAAACTTGCAAATGCTTATTTTTACGCCCATAGGTAGAGTTTCTCAAGACCGGGTTGAGTTGGTTTAGAGGACGGGGAGAGAAGCTCAGCAAACAGGAAacctagcaaaaaaaaaagagtgataaAAGAAGTTACGTAAGAAAGAcgtagagagaaagacaaaacatATTGCGAGGAAAAACATAGGAAAGCGCGAGcgtagtgttttgtttttctttaacgCGGCGGGAGAGCGCGCGACCGGGCGACAAGGAAGACTAAAGCAAACAGGCGTGTGGATAACGAGCTCATCGCACCCCTCACTGGGGGGGTAGAATGGAAACGATCGTCTGTGTCCTGAACCGCAGCGCCACGGCACcatgaagaaagaaatgagtTTAAACCTGGACGACCAGAACAGCTCGAACCTCAAGCCGGATTTGCGGGACGCGGAAGGCATACTCAGCTCCCAGGACCTGGGGCTCCTAAAGCTGGCCTCGCCTGAGCTGGAGAGGCTGATCATCCAGTCCAACGGCATGGTCACGACGACCCCGACCTCTCAGTTCGTCTACCCGAAACCGGTGAGCGACGAGCAGGAGTTCGCAGAGGGTTTCGTGAAAGCCCTGGAGGACCTGCACAAGCAGAACCAGCTGAACGGCGGCGCGGCGACTCTCAACCGCCTCGCAACAGGCGCCGCTCTCGCCTTGCCGTCCGACCTTCCGGTCTACACGAACTTGAGCACGTATGGAGGCGGTGCGCTGGGCACAGCTGTGAACTACTCCACGGACACGATCCCTTTCCCGCCGCCGCCAGCGTCCTCAGCGTCGTCGTCGCACGCGAACACACCGACCGCGCAGCAGGCCACGCACGCGCGGATCCGTTCGCCCAAGGACGAACCGCAGACCGTCCCCGACGTGCAGAGCTTCGGCGAGAGTCCGCCTCTGTCACCCATCGACATGGACACGCAGGAGCGCATCAAGGCCGAGCGCAAGAAGCTGCGCAACCGCATCGCGGCCTCCAAGTGCCGCAAGAGGAAGCTGGAGAGGATCTCGCGCCTGGAGGACAAAGTCAAGACGCTGAAGACGCAAAACAGCGAGCTCGCGTCCACCGCCAGCGTGTTGCGCGAGCAGGTCGCGCAGCTCAAACAGCGGGTCATGAACCACGTGAACAACGGCTGCCAGCTGCTGCCCACCCAGGTGCAGGCGTACTGAGGATGCTTTTCACTCTCATCAGAGCTGTGCCAACAGAGCGGACACTGATTTTGGTGCTCATGTACATAagagacatttttttatatacacacacacgcacgcacacatgtTTACACCATTTTGTAGCAAATGAACTGATATGAACTCTTTGAGAACTAACCCTCCCTCTGGAGCTTTGCTTACCTGCAGAGTTCATTTCCTGTATGCATCTAATAAAACATGGCATAAGATCAAAGGAGTGAGAAGAGATTAGTTGATTCAGGCGTGTTATATGGTTTAAACTAAACAGCAGGAAGGTAGGCCTAAACCTGTCTTACTGACTGCAAGTCTACGACAATTGCATTTACACTACTACGTGTCATAGGTCTCAGGGTCTGGGCCTAGCTACCTGAGACAGGAGAAGACttaaagcagcagcagtgttttgcatgataatgataatgagacAAACTCAATGAGTGCAACCAAACACAGATGTCGTGCATGCACACTTCATGTGTAAAGCCTTAATTGTGTAAAAACACTTATTAACCAATGACCTTATCTAATTTATATACAGCTATTCACACAATGTCTTATTTCTTGCTGTTGTGACCTGTCATtgatttacttgtttatttgacACATGTCTGAGTACCGCCTTCAAGATTTCTTGAAATACTGTCAAATAAAAGTGATATTGTATTTGC
>XR_004580319.1
TGAAATGACATAATGGAATTTTCTGGGATAGAAAACTTGCAAATGCTTATTTTTACGCCCATAGGTAGAGTTTCTCAAGACCGGGTTGAGTTGGTTTAGAGGACGGGGAGAGAAGCTCAGCAAACAGGAAacctagcaaaaaaaaaagagtgataaAAGAAGTTACGTAAGAAAGAcgtagagagaaagacaaaacatATTGCGAGGAAAAACATAGGAAAGCGCGAGcgtagtgttttgtttttctttaacgCGGCGGGAGAGCGCGCGACCGGGCGACAAGGAAGACTAAAGCAAACAGGCGTGTGGATAACGAGCTCATCGCACCCCTCACTGGGGGGGTAGAATGGAAACGATCGTCTGTGTCCTGAACCGCAGCGCCACGGCACcatgaagaaagaaatgagtTTAAACCTGGACGACCAGAACAGCTCGAACCTCAAGCCGGATTTGCGGGACGCGGAAGGCATACTCAGCTCCCAGGACCTGGGGCTCCTAAAGCTGGCCTCGCCTGAGCTGGAGAGGCTGATCATCCAGTCCAACGGCATGGTCACGACGACCCCGACCTCTCAGTTCGTCTACCCGAAACCGGTGAGCGACGAGCAGGAGTTCGCAGAGGGTTTCGTGAAAGCCCTGGAGGACCTGCACAAGCAGAACCAGCTGAACGGCGGCGCGGCGACTCTCAACCGCCTCGCAACAGGCGCCGCTCTCGCCTTGCCGTCCGACCTTCCGGTCTACACGAACTTGAGCACGTATGGAGGCGGTGCGCTGGGCACAGCTGTGAACTACTCCACGGACACGATCCCTTTCCCGCCGCCGCCAGCGTCCTCAGCGTCGTCGTCGCACGCGAACACACCGACCGCGCAGCAGGCCACGCACGCGCGGATCCGTTCGCCCAAGGACGAACCGCAGACCGTCCCCGACGTGCAGAGCTTCGGCGAGAGTCCGCCTCTGTCACCCATCGACATGGACACGCAGGAGCGCATCAAGGCCGAGCGCAAGAAGCTGCGCAACCGCATCGCGGCCTCCAAGTGCCGCAAGAGGAAGCTGGAGAGGATCTCGCGCCTGGAGGACAAAGTCAAGACGCTGAAGACGCAAAACAGCGAGCTCGCGTCCACCGCCAGCGTGTTGCGCGAGCAGGTCGCGCAGCTCAAACAGCGGGTCATGAACCACGTGAACAACGGCTGCCAGCTGCTGCCCACCCAGGTGCAGGCGTACTGAGGATGCTTTTCACTCTCATCAGAGCTGTGCCAACAGAGCGGACACTGATTTTGGTGCTCATGTACATAagagacatttttttatatacacacacacgcacacacacacgcacgcacacacacacacacacacacac

Function

symbol description
jund Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of cell cycle; regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Orthologous to human JUND (JunD proto-oncogene, AP-1 transcription factor subunit).

NR:

description
PREDICTED: transcription factor jun-D-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04449 JUND; transcription factor jun-D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925364.2 True 1910 mRNA 0.51 1 16100533 16102442
XR_004580319.1 False 1357 misc_RNA 0.57 2 16100533 16111089

Neighbor

gene id symbol gene type direction distance location
uba52 uba52,LOC100135798,LOC100194659 coding upstream 58795 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 62353 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 101093 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 115948 15938895 ~ 15984585 (+)
arhgap45a LOC108280537,LOC108427168 coding upstream 177244 15894001 ~ 15923289 (+)
cplx4c cplx4c,LOC108280361 coding downstream 51365 16162454 ~ 16167346 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding downstream 63481 16174570 ~ 16180499 (+)
trnag-gcc_18 NA coding downstream 72983 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 74408 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 76900 16187989 ~ 16193122 (+)
G321247 NA non-coding upstream 1532 16098615 ~ 16099001 (+)
G321246 NA non-coding upstream 3142 16096253 ~ 16097391 (+)
G321245 NA non-coding upstream 4304 16095903 ~ 16096229 (+)
G321241 pgpep1,LOC107660389,LOC107596298,LOC107552686,LOC107696873 non-coding upstream 6709 16091596 ~ 16093824 (+)
G321239 NA non-coding upstream 10134 16089606 ~ 16090399 (+)
G321253 NA non-coding downstream 18112 16129201 ~ 16129800 (+)
G321254 NA non-coding downstream 18860 16129949 ~ 16130269 (+)
G321255 NA non-coding downstream 19333 16130422 ~ 16130684 (+)
G321256 NA non-coding downstream 19641 16130730 ~ 16131005 (+)
G321258 NA non-coding downstream 24235 16135324 ~ 16137604 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 163760 15929947 ~ 15936773 (+)
G321088 NA other upstream 229538 15869016 ~ 15870995 (+)
slc25a42 slc25a42,LOC107696381 other upstream 418257 15625802 ~ 15682276 (+)
LOC113533167 NA other upstream 530055 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 797245 15299061 ~ 15303288 (+)
si:ch211-178n15.1 LOC108280694 other downstream 946 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 20246 16131335 ~ 16132364 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 631716 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 645542 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 680313 16791402 ~ 16793698 (+)

Expression


Co-expression Network