LOC117599972 (LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692)


Basic Information

Item Value
gene id LOC117599972
gene name LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16742805 ~ 16748340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380811
CCCTGGGGAAGCGCGCGAAGGCGATGGAGAGAGCACGAGAAGAGAAGCGTGAGCTAAGAGCTGCGCAGAACtcttgatttatttgattttatcaGGAAATACACTTGCGAGGAACAAGCAGTTGGAGTAGGCCATCATTAAGTCATCCGCTGAAACTTGAAAGGGATTAAGAAATAGCATTAATACACAAGGGAATCGgccaGTTTTGTCATTCTAGAAATCTAGATTTCAGACCTCCCTATTCGTAGACTGTATTGATGTGAACGCTTCACATGTGCATCGTGTAAAGATGGCGAGCCACCCGTGAGACGACGAGAGACACTTACCcctctttgttttttccccgtggacttctgcatttttttcattaccTCTAGCAAGGTTTCGCTGGACTTCTGGAGGTTTGAAGTATCCATTATATTTTTGAGTACTGGGCTATTCATTATAAGGAACCAAGGAAAGAAAtatcatttgttattatttggACTGACACTGGATTGTGCATTTCAAGAGTTGCTGATACACATTCAATTTGTGTATAATTCTTTAGGGTGCCAATTTGTGTATGCGATTCCATTTAACCGCTGATGTTTGGGTCTATTGCTTTGCATTTGTTGGACTtgagtgtatgtatatttggGTTGTGTATATAAATTGGACTCTAAGGTGCTAAAATTTAGTTAATATTGATATAAGatcaaatataaaagaaatggGGATCAAGCCTAGCATAATATTCGAGACATAAATTTTAAGTTCATTTCAGAGGAAGGAATTTCTggtatttaaagatttcattttaattcatttgtgtaatttaattGGGCGTATGACAATTTGGGGTTGATTTATATGTTTTCcagtttatattttcttttgctctgtTTCCTTTCCTATCCATACAGTGTTATT
>XM_034314721.1
aaagaaatggGGATCAAGCCTAGCATAATATTCGAGACATAAATTTTAAGTTCATTTCAGAGGAAGGAATTTCTggtatttaaagatttcattttaattcatttgtgtaatttaattGGGCGTATGACAATTTGGGGTTGATTTATATGTTTTCcagtttatattttcttttgctctgtTTCCTTTCCTATCCATACAGTGTTATTGACacaatttttctgttaaaattcaaataccTTTCTTACTTATAAAtaggtataaatataaataagtgcaCTGAAAccgtatctgtgtgtgtgtctccttgcCTCCTACGAATCCTTGCGTCTTCTGATTGAGGTAAATTGGGTCTATGGTATTCccataaataatcatttaaatttttgcGTGTAAGCTCCTAATTTGCACTGACGGGGGTTACACTGTACatcatattaaaatgagcatattaatataaacctgtgatctgaattacagccagaattTGTTTGCCTAGAGAGTTAGATATAAATGACATCTTTTCACAGATATTTGAATAAGTAAATTAACCTACATGATATTGCCACAGGAGCTGAGATACTTCATAGTAAGGTTAACCAGAGGAGGAACTGCTTAAGCTGCTACAGACACAGTAAGAACTTCACACAGAAGCAGGACTCAAGAATTGGAACAAATCTAACATGAGCTACTTTTTGAGTTTTATTCTCTTCATTTCCAGTGTTGACAGTTTTTCGTCAGCATCCAGACAGTTAAGTCTTAAAACTGGAGCATCTGTCACCATCCCATGTCATTATGATAGGAAATATATACAACATAAAAAATACTGGTGCTATGGAATAATATTCAATTTCTGCAAAATTCAGGCGTATGCCAATGACACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATGAGCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGACGAATGCGGCAATTCAGTGGGGAGGACTGATACttcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGACGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACCACTCACCATGTCACTACTTACACTGGGGGTGAGACCCTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCTGTAAGAAATGCAAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAACTCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGATGAGAACATCTACAGCAACGTGGTTTGCCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAAAACAATTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaacaattggtGTTTGCAAATAAAAAGCAATTCCCGCATCTAGTATATCTATGTATTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattgtgacagtgtttgtctgtgta
>XM_034314722.1
actgcagtcaaACTATTTCATACCGAGCTCTTGGTCTGCTGTGCAGGTGAGCAGCCAATTGCGTGTAATTAGAAAAAGCTGACTCCGCCCCCTGGGGAAGCGCGCGAAGGCGATGGAGAGAGCACGAGAAGAGAAGCGTGAGCTAAGAGCTGCGCAGAACtcttgatttatttgattttatcaGGAAATACACTTGCGAGGAACAAGCAGTGTAAGTTATTTTGTTGAGAAAACAAAATTTCTTAGTAGTTTTCAAAAGAACTTACCTTTATCCTGTTGATCCGTGTCGCATCATCATGGAATCCAGTGGAGTAGGCCATCATTAAGTCATCCGCTGAAACTTGAAAGGGATTAAGAAATAGCATTAATACACAAGGGAATCGACTTCATAGTAAGGTTAACCAGAGGAGGAACTGCTTAAGCTGCTACAGACACAGTAAGAACTTCACACAGAAGCAGGACTCAAGAATTGGAACAAATCTAACATGAGCTACTTTTTGAGTTTTATTCTCTTCATTTCCAGTGTTGACAGTTTTTCGTCAGCATCCAGACAGTTAAGTCTTAAAACTGGAGCATCTGTCACCATCCCATGTCATTATGATAGGAAATATATACAACATAAAAAATACTGGTGCTATGGAATAATATTCAATTTCTGCAAAATTCAGGCGTATGCCAATGACACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATGAGCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGACGAATGCGGCAATTCAGTGGGGAGGACTGATACttcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGACGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACCACTCACCATGTCACTACTTACACTGGGGGTGAGACCCTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCTGTAAGAAATGCAAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAACTCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGATGAGAACATCTACAGCAACGTGGTTTGCCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAAAACAATTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaacaattggtGTTTGCAAATAAAAAGCAATTCCCGCATCTAGTATATCTATGTATTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattgtgacagtgtttgtctgtgta
>XM_034314724.1
aaagaaatggGGATCAAGCCTAGCATAATATTCGAGACATAAATTTTAAGTTCATTTCAGAGGAAGGAATTTCTggtatttaaagatttcattttaattcatttgtgtaatttaattGGGCGTATGACAATTTGGGGTTGATTTATATGTTTTCcagtttatattttcttttgctctgtTTCCTTTCCTATCCATACAGTGTTATTGACacaatttttctgttaaaattcaaataccTTTCTTACTTATAAAtaggtataaatataaataagtgcaCTGAAAccgtatctgtgtgtgtgtctccttgcCTCCTACGAATCCTTGCGTCTTCTGATTGAGGTAAATTGGGTCTATGGTATTCccataaataatcatttaaatttttgcGTGTAAGCTCCTAATTTGCACTGACGGGGGTTACACTGTACatcatattaaaatgagcatattaatataaacctgtgatctgaattacagccagaattTGTTTGCCTAGAGAGTTAGATATAAATGACATCTTTTCACAGATATTTGAATAAGTAAATTAACCTACATGATATTGCCACAGGAGCTGAGATACTTCATAGTAAGGTTAACCAGAGGAGGAACTGCTTAAGCTGCTACAGACACAGTAAGAACTTCACACAGAAGCAGGACTCAAGAATTGGAACAAATCTAACATGAGCTACTTTTTGAGTTTTATTCTCTTCATTTCCAGTGTTGACAGTTTTTCGTCAGCATCCAGACAGTTAAGTCTTAAAACTGGAGCATCTGTCACCATCCCATGTCATTATGATAGGAAATATATACAACATAAAAAATACTGGTGCTATGGAATAATATTCAATTTCTGCAAAATTCAGGCGTATGCCAATGACACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATGAGCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGACGAATGCGGCAATTCAGTGGGGAGGACTGATACttcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGACGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACCACTCACCATGTCACTACTTACACTGGGGGTGAGACCCTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCTGTAAGAAATGCAAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACACCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAACTCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGATGAGAACATCTACAGCAACGTGGTTTGCCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAAAACAATTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaacaattggtGTTTGCAAATAAAAAGCAATTCCCGCATCTAGTATATCTATGTATTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattgtgacagtgtttgtctgtgta
>XM_034314725.1
aaagaaatggGGATCAAGCCTAGCATAATATTCGAGACATAAATTTTAAGTTCATTTCAGAGGAAGGAATTTCTggtatttaaagatttcattttaattcatttgtgtaatttaattGGGCGTATGACAATTTGGGGTTGATTTATATGTTTTCcagtttatattttcttttgctctgtTTCCTTTCCTATCCATACAGTGTTATTGACacaatttttctgttaaaattcaaataccTTTCTTACTTATAAAtaggtataaatataaataagtgcaCTGAAAccgtatctgtgtgtgtgtctccttgcCTCCTACGAATCCTTGCGTCTTCTGATTGAGGTAAATTGGGTCTATGGTATTCccataaataatcatttaaatttttgcGTGTAAGCTCCTAATTTGCACTGACGGGGGTTACACTGTACatcatattaaaatgagcatattaatataaacctgtgatctgaattacagccagaattTGTTTGCCTAGAGAGTTAGATATAAATGACATCTTTTCACAGATATTTGAATAAGTAAATTAACCTACATGATATTGCCACAGGAGCTGAGATACTTCATAGTAAGGTTAACCAGAGGAGGAACTGCTTAAGCTGCTACAGACACAGTAAGAACTTCACACAGAAGCAGGACTCAAGAATTGGAACAAATCTAACATGAGCTACTTTTTGAGTTTTATTCTCTTCATTTCCAGTGTTGACAGTTTTTCGTCAGCATCCAGACAGGCGTATGCCAATGACACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATGAGCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGACGAATGCGGCAATTCAGTGGGGAGGACTGATACttcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGACGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACCACTCACCATGTCACTACTTACACTGGGGGTGAGACCCTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCTGTAAGAAATGCAAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAACTCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGATGAGAACATCTACAGCAACGTGGTTTGCCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAAAACAATTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaacaattggtGTTTGCAAATAAAAAGCAATTCCCGCATCTAGTATATCTATGTATTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattgtgacagtgtttgtctgtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380811 False 912 lncRNA 0.38 3 16742894 16744115
XM_034314721.1 True 2334 mRNA 0.39 11 16743910 16748340
XM_034314722.1 False 2139 mRNA 0.42 11 16742805 16748340
XM_034314724.1 False 2331 mRNA 0.39 11 16743910 16748340
XM_034314725.1 False 2220 mRNA 0.40 12 16743910 16748340

Neighbor

gene id symbol gene type direction distance location
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 2202 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 25598 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 36482 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 113333 16620683 ~ 16629472 (+)
LOC113533302 LOC108280185,LOC108427202 coding upstream 177784 16542334 ~ 16565021 (+)
LOC117599971 LOC108280611 coding downstream 1843 16750183 ~ 16755500 (+)
LOC117599974 LOC108261605 coding downstream 50446 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 72395 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 81762 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 112483 16860823 ~ 16868946 (+)
G321563 NA non-coding upstream 38989 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 142212 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 285637 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 296681 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 356282 16386257 ~ 16386523 (+)
G321582 NA non-coding downstream 1820 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 11502 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 40846 16789186 ~ 16789607 (+)
G321591 NA non-coding downstream 44374 16792714 ~ 16859578 (+)
G321602 NA non-coding downstream 144473 16892813 ~ 16893024 (+)
G321257 LOC108280695 other upstream 610441 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 622772 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 631716 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 806032 15929947 ~ 15936773 (+)
G321088 NA other upstream 871810 15869016 ~ 15870995 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 8291 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 43062 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 90428 16838768 ~ 16859682 (+)
fuz fuz other downstream 730494 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 822309 17570649 ~ 17636609 (+)

Expression


Co-expression Network