LOC113533485 (LOC108280611,LOC108261562,LOC108280616,LOC108261605)


Basic Information

Item Value
gene id LOC113533485
gene name LOC108280611,LOC108261562,LOC108280616,LOC108261605
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16718816 ~ 16740603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297722.1
AAGGAAGTGAAACTAAGTGCATGGTTCTCAGAAGAGCTGCTCATGCACGAGTACGTCCATTAACACACAGCAGGATGacttctctcctttttctcggTGTTCTCCTTCTTCAACTTCCAGGTGTCCTGTGCACTGTGACCACAGTGGGAGAGTGGACAGTGTTAGAGGGTCAATCGATCATTGTCCCCTGCCATTACAACCCTGAGTACACTCCGAATGTGAAGTACTGGTGCCAGGGCCCCATGAAGGACTTCTGTACCACTCTGGCACGCACAAACCAGCCAGAATCTGCTCCATCCTCAAAAGCGAGAATAACGATTACTGATGACCCGAGGCATTATGTGTTCACAGTGACCATGCGTGAGCTGAAGGAGAAGGACTCGGGCCGGTACTGGTGCGGTGTGGAAATAGGAGGGATATGGAACAAAGATAGCACCACGTCATTTTATATAAGTGTCATACACGGTATGTCAGTAGCAAACAATGAAGTAAGTGCTGAGGAGGGTGGCAGTGTCACTGTGCAGTGCCTCTACAGTGAGAAACACAGGGAGAATGAGAAGAGATGGTGCAGGAGTGGTGACATAAGCTCCTGCAAGGGTACAAGCAACGGGACGTTCAGCAGTGAATCTCTGCTCATCAGCGATGACAGGAAGGACACAGTTACCGTGACGATGAGGCGTCTGGAGAAGCGGGACACAGGATGGTACTGGTGCGAAGCTGGCGAGCACCAATTGTCTGTTTATGTGTTAGTCACTCCAAGATCAACCACAACTGCCTTGGatgtaaaaacacaacagcatctGTCCGAGGTTAAAGCTCAGAACTCCAACAGTCACAATGTTCGGCAGTCTCTTCTGATAGTGTGTGGAGCTCTGTTGTTCTTGGTAACATGGATGATATGGAAGCGATTTAAGAAGACACCTAATCGTAGGAAGCTGGACGAACCTGAAACATGGTGTGCCCAAGGAAATGTGGAAGCTAGAAAACTCTCCTCTCATCTTCCAGAACACTTTAGCCCATCAGGTCCACATATTGTCATGAACTCCCCCCTCACCGCATGGCACGGTTCCGAGTACGACGAGCTCTGCTCTCATCTTTTGTTTGAGTTCACTCCGTTATTGGGAAACACAAACCAGAAGTGCCTTAAATGCTACAGACCCAATCGTATTCAACATCAGAGAAAATCTGCAATGCGCTGcctttttattgttattcttttcatttcaaGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTCTTAAAACTGGAGAATCTGTCACCATCCCATGTCATTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAAGAACATTCAATTTCTGCAAAATTCAGGCATATGCCAATGACACACAAGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGAAAATACTGGATGGTACTGGTGTGTTGTAGAGATAGGTGGAATAAAGACGCCAGATATTAAAGAAGATCTTTCCATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCTCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGCGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCTTTGGTGACGTTTCAGATTCTCCAGATTCCAAAGAACGCATGAGATGCAATACACTAACCAAGCCTGCAGTGACATTCAGTAAGGAAgttaaaacacagacacacacacactctactgtGTTTTATATTGGGAAACATAAACAGGAACTGCATGAGCCTCTACAGATACAGAACCAACTACACAGAGGAGTAGGACgtgtaaaacattttattcaacaTCAGAAAAAATTTGCCATgtgctgcttttttattttcattcttttcatttcatGTGCTGTCTGTCAGGCATCGAGGCAGTTTAGTATTAAAACTGGAGAATCTGTCACCATCCCATGTCGTTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAGGAACATTCAATTTCTGCACAATTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAGTGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTGGAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGAGGTGAGGAAGGAGGCAACATCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACTCAGTGGGGAGGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTCAGCGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCATATTTCAGTTAATAATTcaacagTTTTTCTAAATGTGACCACAAATACAGATCAACAGAAGGACAATTCAGTGCATGAAATGATGTCTCTCTGGCTCCTGGTGGCTGTAGGACTGGGGCTGCTGCTCATTCTTGTCAGCATTGTAACTTACATGTTCAGAAAGACATGCAAGAAGGAAAATCAGACAAGGACTAGAAAGAAGAGCAATGATGCCGCTGCTCACACACCATCATCAGCAGTGGATCATGAAGGAGATGTGAcctacagctctgtgttttaTGCAACCAAAAATCAAACTCAGTCTCTGAGAGTCAAAGATGATGAGGTGACCTACAGCAAAATGAACTCTCCGCCAGTCAGAGATGATGAGGTGACCTGTGGCAATGTGCATTCTCTAGGAGACAGAGACAATGAGGTGACCTACAGCACAGTGGTTCGTGATTAAGAGggtcagtgtagatccagagccaatcctggGAGCACTGGATGCAAGGCAGAAatgcaccctggatggaacaGCAGTCCACGCATTCACACACCAATTCACACCAAGGGGCACTTTAGAGAAGCCAATCAACCTACAAGCATGTATTTTGGGGGAgaagaacccagagaaaacccttACAGAAATCAGAAGAACTTGTGAAACTGCAGACAGCTATTAACCAGAACTCAGGTCAGACTCTGGACCCTGGAGGCGTAGTGCCACCATGACGCCCATGGACTACTTTCTTTACTTTGTAGAAGACAAATTTGAAATGGAGATGCTAAAATGAAAGTGGATCTATTAAGAAAAGAGTTTTgtggatggttaatggttctagctttctaaaagggTCCTACCTAGATCATTTTCTGCAAGAGAAACCCTCTGTTGCAGTGTCCTACATAGAACTGTTAATGATTTTCTGCAGATGGATCAATCGATTAATCTTTTAAGGCCAATTTACACTGGACAAAGCTTATTTTTGACCCACTGTCTCAAGCAATGCTGAGATGTAAAACTGGGGCAGTGAGCTTGTGACATTAAAATTTAACTTGCTGTTGTCAAATTGGGCTTTCTGGAGCAAAGCACCGTCATctgaaaaaagtgtgtaaatcaCAAAGGAAATTCGCTTTAACTGTCCAGTATATGTCACCATGGGCCAAGTGTTCTTATTGGAAAAATCGTTGTCATTTTACCATGAGTTGCTCTCTCTACATAGTTCTACATAGAATCTTTAATGGATCACCCAGATCCAAACCAAAGCACGCTTGAAGAAGGCGGCTTGTAAATTTCCTAAAAgtgatatactgtaatattatactattataattaagtaaggaataacacatgggTTATTTTCATACAGCACATAACATAACAGCAGTATGtaatgtgttattccttacaaaatGGGGTAGAACACagtattttattgcattatctgtctatctgtctgtctgtctgccagaCCAGTACAAAATTTACTTTCTTAGTCAATGGAGATTTTCTGTCATAAAGCATAAGAGCATTCATTTTCTAAACAATACATTCTAAAGTTATGCtccaacatt

Function

GO: NA

KEGG:

id description
K13073 PIGR; polymeric immunoglobulin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297722.1 True 4264 mRNA 0.44 25 16718816 16740603

Neighbor

gene id symbol gene type direction distance location
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 1609 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 12493 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 89344 16620683 ~ 16629472 (+)
LOC113533302 LOC108280185,LOC108427202 coding upstream 153795 16542334 ~ 16565021 (+)
LOC113533391 LOC108280648,LOC108427199 coding upstream 250450 16460810 ~ 16468366 (+)
LOC117599971 LOC108280611 coding downstream 9580 16750183 ~ 16755500 (+)
LOC117599974 LOC108261605 coding downstream 58183 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 80132 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 89499 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 120220 16860823 ~ 16868946 (+)
G321563 NA non-coding upstream 15000 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 118223 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 261648 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 272692 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 332293 16386257 ~ 16386523 (+)
G321584 NA non-coding downstream 5173 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 9557 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 19239 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 48583 16789186 ~ 16789607 (+)
G321591 NA non-coding downstream 52111 16792714 ~ 16859578 (+)
G321257 LOC108280695 other upstream 586452 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 598783 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 607727 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 782043 15929947 ~ 15936773 (+)
G321088 NA other upstream 847821 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 2202 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 16028 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 50799 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 98165 16838768 ~ 16859682 (+)
fuz fuz other downstream 738231 17478834 ~ 17483677 (+)

Expression


Co-expression Network