LOC113533121 (kcnj10,LOC108280182)


Basic Information

Item Value
gene id LOC113533121
gene name kcnj10,LOC108280182
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16620683 ~ 16629472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925003.2
AGCTGCTTGGCTAATCACAGATCAACTGACACACAAAAGGGACAAagtggctgtgtgtgtctgagaaagagagagagagagattaggatGCAAGAGCTGCTTGAATGTTCCTCTTCCTCATGAGCGGAAGTCTGTTTTTACCTCAGATTTTACCTCAAATTTTTACCTCAGGCTGTGTGGATGTCACGCGAGCCGTAGTTATGAAGCATTGAGCGCGAGGAGCTGAAGCGCCACCGGACGCTTGATggtgatttctgtgtgtgtctagggACATCATTAAGCAAACCGACAAGatgacaTCAACACTACACGGGCAGAAGGTGTGCCACTcgcagacacagacagatgcCCTGAAGCCACTACTCGGAGGGACAGGATGTGGAATTGAAACACTTCGCCGCCGTCGGCGCTTAATGTCCAAAGATGGACGGAGCAATGTGCGTGTGGACCACGTGAGCGGGCAGCACGCACTGTATCTACGTGATCCGTGGACGACCTGTGTGGACATGCAGTGGAGATACAAGCTGCTCGTGTTCAGTGCCACCTTTGTAGGCACCTGGTTTGCCTTTGGCCTGTTGTGGTACCTGCTGGCTCTGGTGCATGGAGATCTGCTGGAATTCGATCCTCCAGCCAACCACACATTGTGTGTGATGCAGATGCAGACTCTAACGGGAGCTTTCCTGTTCTCCCTGGAGACGCAGACGACCATTGGTTACGGTTTCCGCTGTATCACAGAAGAGTGTCCATCTGGCATTGTACTTCTCGTCATCCAGCTTCTTATTACCACCGGCATGGAGATCTTTATCACAGGAACCTTCCTCGCCAAGGTTGCTCGGCCCAAGAAACGTGGGGAGACGGTTCGTTTCAGCCAGCATGCTGTCATAGCCAGTCACAACGGGCAGCCATGTCTTATGATCCGGGTGGCCAACATGCGCAAGAGCCTCCTTTTGGGCTGCCAGGTGACTGGGAAGCTGCTCCAGCGTTGTGCTCCTAAAGAGGGCGAGACAGTTCGTCTAGACCAGAAGAACGTCCCGTTCAGCGTGGACACAGCCAGCGAGAGCCCCTTCCTTATCCTCCCTCTCACCTTCTACCACACTATCGACAGCGAGAGCCCCCTCCGAGCGTGGGCTGCCAAGGgtGTTGGATGGACCGAGCCAGAGCTGGCTGATTTTGAGCTCTTGGTGATGATGAGCTCCACGGTGGAGCCGACGTCTGCTATGTGCCAGGTGCGAACATCCTACCTGCCTGAAGAGATTCTGTGGGGCTATGAGTTCCCACCcattgtctctctgtctccaatGGGGAAATACGTTGCTGACCTTGCCTACTTTGACAAGGTCGTCAGGGCCAAGACCCCACCCATATTCAGACAGTCctcacccaccagccagcaGGGTTACCATAGTAGCGGAGAGGGAGGAGACCCAGAGAAGATACAGTTGGAGCTGAGTTATAGAGAAGCAGGCCAGGAAGGGGGAAGGGGGAGAGACGGGAGTCCGTCGGGAGTTAGAATAAGTAATGTGTAACACACTTAtagtacatgcacacacacacacacacacaatggcatGTGCCATACTTAACAGATGATGCCCAACAAAGTGTCCTGATATTAGAAAGTAGCAGAACACCACGATCCTAGCATATAAAGTGTAAAGGAGTAACACTGAAATCTGATTAAACTACTCATACTACTGGGACAGCATAGGTACTAGAATGATATTATGTCATTTAGGTACAGTATATTAagctactgtatataaataaacaatatttaaccTTGTCCTGTCAAGATGGACATCGTGAGACAATATCTCCCTCTAGTGGATACACTTAATGCCGCTAGTAACGATGCAACGTAACTGGTTTTCACTAAACCTTTATAATTTGTCTGAACACTTAGACACCGCTGATCATATAAATAATAACCATGATGACGATCACAAAAACAACTTAGCTGATACAGATCATGATACAGACTGAAATTGTGAACAAGATGTTGCTGTGAACAAGAAGTTTTGATTTGAACTAGTTGTTCAGTCACGTCGGGTATGTAGTTATGTGTCTTGTTTTTGAACTGTAATGAATTGTTACTGAACCAGGTGTCATTACGAATACTAAGagtacacacattacacagtgaATTTTTAGAATAAAGATTTACTACTTTGTGAATACTTCCATTGATACATGGTGAAAACAATACaggaaaatatgtaatatgtttacacacacacacacacacacacacacacacacacacacacacacacaggttaaaaGTCATCATATCTCCTCTTCTAGCTCTTTCTGTTCTCCCTGGGAACAAAAGCTATCCCAGGAAGATTCCCCAACAAACCACAGCATAATATAATGGCCGAATAGAATATCCACAAATTATTGTTTAGCATCTTGAGCTTGCCCTCAACCATTTCTTGTTTCACTAGGATTTAAATATCACTTTGTCTATATGCCAAACTCACTAACTCATTTCATGTGATATGTCAACATTTCTTAACCACAAGCCAATAGAGAATGGTAATACTATACCCACACTTGTTAGTGCACTGCGAAAGCTTTTATTACTGGATTTAATCTAAATGTAATTTAAGTAAAATCCCCAAGAGGTCAGAAAGGGATCAGACTAAAAATCGTGAGTTCCTCTTTTTGTAACACTACTCTATTTTTGTCTGCAAATTTATGCAGAGAAGGAGAAGTGGATGGGATGATAAACAGGTTTTTCTGCTTCTAGGAATTATGTATTTGCACAACACATTAACTGTGAATAGTTTTGCTTTCactcatttatatatacatcTAAAAAGAGGTAGTAGTAGCTGAGGGGTTCTTCAGAAAGCAGACAAAAATGGTGAAAATATGGTTGAGTTTATGCACATAAGGGCCAGATATGGCAATGCCAAGTGTAAGTTGTGCAATAGTAAGCAGCTTTTAAGCaacatttaaagtttttaacCGCGTTTGAAATgtggtccaaaaaaaaaaaaaaagacccaaatGCAATAAATTCTAGTGTTGAATTTCAATACCCAAAGTGGAACAGCTATAAACATGCAGTCTCATCAACACTGAATGAAGACTGTCTCCTGGAAGGCAGATTTGCATGAATTCATCGCCGTCATTTTATAGGCAGTATGTGGGCCAGTTGAAGTGGTCACTAAGGAATAATTTATTTACGAGTTTGCgtaatcagaaggttgtgagttcaaatcctagggCAAATCTGCCCTTGAACAAGACCTTCAACATTTAGTTGTTTTGCTTCTCTGCTTATGtctccaaataaaaaaaatgtaagtgaaataa

Function

symbol description
kcnj10 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including adult walking behavior; ion transmembrane transport; and regulation of resting membrane potential. Predicted to be integral component of plasma membrane. Predicted to be part of astrocyte projection and cell body. Predicted to be active in ciliary base and plasma membrane. Implicated in EAST syndrome and autosomal recessive nonsyndromic deafness 4.

GO: NA

KEGG:

id description
K05003 KCNJ10, KIR4.1; potassium inwardly-rectifying channel subfamily J member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925003.2 True 3324 mRNA 0.44 6 16620683 16629472

Neighbor

gene id symbol gene type direction distance location
LOC113533302 LOC108280185,LOC108427202 coding upstream 55662 16542334 ~ 16565021 (+)
LOC113533391 LOC108280648,LOC108427199 coding upstream 152317 16460810 ~ 16468366 (+)
ndufa13 ndufa13,LOC102786334 coding upstream 160303 16457677 ~ 16460380 (+)
LOC113533360 LOC108280712,LOC108427196 coding upstream 164697 16425377 ~ 16455986 (+)
mau2 mau2 coding upstream 201275 16404788 ~ 16419408 (+)
tgm1l1 LOC108280800 coding downstream 54184 16683656 ~ 16706323 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding downstream 84927 16714399 ~ 16717207 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 89344 16718816 ~ 16740603 (+)
LOC117599971 LOC108280611 coding downstream 120711 16750183 ~ 16755500 (+)
LOC117599974 LOC108261605 coding downstream 169314 16798786 ~ 16805263 (+)
G321454 NA non-coding upstream 20090 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 163515 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 174559 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 234160 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 433642 16186971 ~ 16187041 (+)
G321563 NA non-coding downstream 36958 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 116304 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 120688 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 130370 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 159714 16789186 ~ 16789607 (+)
G321257 LOC108280695 other upstream 488319 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 500650 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 509594 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 683910 15929947 ~ 15936773 (+)
G321088 NA other upstream 749688 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 113333 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 127159 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 161930 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 209296 16838768 ~ 16859682 (+)
fuz fuz other downstream 849362 17478834 ~ 17483677 (+)

Expression


Co-expression Network