LOC113533288 (dad1,LOC103040403,LOC107687594,LOC107726313)


Basic Information

Item Value
gene id LOC113533288
gene name dad1,LOC103040403,LOC107687594,LOC107726313
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16714399 ~ 16717207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925339.2
gaggagttttgtgacagTTTGCTTCACTGACATGCAACGAGAAGTTTATTTACGGTGACCGTGCGTAACTAGGCATCAACATCCTCTTCCGGTACATGACGCGTTAGTTAGTATGTAGCAGTACTTGCATACTCAAAAGTATACACTTTTTCTTCACCGAAAGAGTCCATAATTTTAGTGCAGAGTATAAATAAGTGAATTGAGACGCAGGGACATACTACGTTTCACTCGCTTTAAAACGTCATTGGCTGAATTACTGGGTTGAGTCCTAAATGTTTTTAGCagatagtgcactacacacagcGTAGAGGTCCTTTATGTCACTCCCTAAATAGTGCGCGAGTATAGGAAGGACGCTAttatttggaacacagccactCATTTACCTTACGCTTTACCTGTAGGAAGATTTAAGCGGCTGGTTAGACGCAGAAACAATGGCTATTAATGTGTTTTCGGTGTTGTCGCATTTTTTGGAAGAATACGCGACCGGCACGCCGACTAAACTCAAAGTAATAGATGCATATTTGCTGTACATGTTACTGACAGGAGCTTTTCAGTTCCTGTACTGCCTGCTGGTGGGGAGCTTCCCGTTCAACAGCTTTCTGTCAGGCTTCATTTCCTGTGTAGGATCATTTACTCTTGCAGTGTGTCTGCGCATCCAGGTCAATCCGCAGAATAAAGGACACTTCATGTTTGTGTCGCCTGAAAGGGCTTTTGGTGACTTCCTGTTTGCACACACCATCCTCCACCTCGTAGTGGTCAATTATATTGGCTGAATGAAGTTCACCTTCTTACCTGGTGCTACTTTTTGCAGGTGTGGAGATGAAATATGGAGGCCTTACTGACCAGCAACTGTCTATGAACGACAGCTCATGCCATGAAAATGCACAttgtaatatgtttaatattgttgttttttactgttttgtgCTTGTCCATCTCAGGAATAAAGTTTTCtacctttttaaaaactgttacaatgagtaaatgaggaataaaggtatttttaaaaacta

Function

symbol description
dad1 Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human DAD1 (defender against cell death 1).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925339.2 True 1019 mRNA 0.42 3 16714399 16717207

Neighbor

gene id symbol gene type direction distance location
tgm1l1 LOC108280800 coding upstream 8076 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 84927 16620683 ~ 16629472 (+)
LOC113533302 LOC108280185,LOC108427202 coding upstream 149378 16542334 ~ 16565021 (+)
LOC113533391 LOC108280648,LOC108427199 coding upstream 246033 16460810 ~ 16468366 (+)
ndufa13 ndufa13,LOC102786334 coding upstream 254019 16457677 ~ 16460380 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 1609 16718816 ~ 16740603 (+)
LOC117599971 LOC108280611 coding downstream 32976 16750183 ~ 16755500 (+)
LOC117599974 LOC108261605 coding downstream 81579 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 103528 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 112895 16830102 ~ 16845645 (+)
G321563 NA non-coding upstream 10583 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 113806 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 257231 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 268275 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 327876 16386257 ~ 16386523 (+)
G321584 NA non-coding downstream 28569 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 32953 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 42635 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 71979 16789186 ~ 16789607 (+)
G321591 NA non-coding downstream 75507 16792714 ~ 16859578 (+)
G321257 LOC108280695 other upstream 582035 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 594366 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 603310 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 777626 15929947 ~ 15936773 (+)
G321088 NA other upstream 843404 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 25598 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 39424 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 74195 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 121561 16838768 ~ 16859682 (+)
fuz fuz other downstream 761627 17478834 ~ 17483677 (+)

Expression


Co-expression Network