G321454


Basic Information

Item Value
gene id G321454
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16594197 ~ 16600593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380660
tatctatgaacccCACACTTTGTTACATGGAAACACACTTATGTATCTGATTAATTGAATGTGTACATACTAGTAGTATATTAACATAAAAGTATTTCGAATTACAGTTCTAgttaatatattgtttttttctgtaagcagtaaaatattttgtaattaatgCATCAAAGGAAAGCCCAAAGACAGAGCTGCTTTACACTAAGTAGCGAAGAATGCAAGCAGTACAATGACTGCGATTAGTATatgcaaaatgaataataaaacagattatgattgtaataaaaatgttccTTTTCTTATTCTTCCTACACACTACAAACATCTGATATCATCAGACAGACTAGAACAGGGGTGTTAATCACTTTTTAGGTAACAGGCCACATGACACTTAGTCCAATGTCAAGTGGGCCAGATTGAATATACACTGTATcaccaacaaaacaaatgaacaattcATTACCATTAGCATGTTCATTTCTAAATTATGGTTTTACCATACAgtgttttgcataaatgttaaCCCCCTTGAACCTTTCCAAATTTTGTAGCGCTACaaactggaactgaaatggatttaattagGATTATACTGGACTAATACATGGACTTAATTAGGAAATGGACCCAGTTAGGATTATATGTAAAATTCGTAGCTTTCTAATGGAGAATTACGGATCAATTTATTGGTCTATTTTGCTCTCTAGTAGAAAAACAGATACTAGCTCTTTTTTCTTATCTTTTAATTCAATTATGGTTCACCACACAGTAATAAATTAGAACACGGATTCTACATTCATTTTCTGTGCCTGTTTTACACCCTTGGACTAGAGGATGACAACATTATAGATTTCTCCAAACTTACAGACATATGTTTTGGCTTTTGTGTTATTGAATGGAACAAAGGCCAGTCACCAATGGAGCTACCTTTGTTGCTGCACCCATTAAAGGAGCTGCTTTTGTAGCTGCTGCCATCACGATGGCTGCAAGCTCTGGTCCGAGCAGTGCGGTTAACTCTGCTGCCAGTCCTACAGGTGCTGCAGCGGTCATAAAAAGTGCAGGTGCCAGCGCAAATCCAGCTCCAGCACCTCCCAAAAAAATGATGAGGTACTTCAGAatagtgaaatatttttcattgtaataCCATTTGCTTTCATCCTCATTTGaagccttttctctctcctcttgctctcttctctgttcttcttCCTTGATCCATATTtctaattcttttttcttttttgcacttTCCTTTATCCTTaactccttctcttcctctagCCTTCTGAGGCTGTTTTTTGCACCCTGTAGAGATCCCTGCAGCAACTGCAGCCTGTGTGGATCTTTATAAaggttttcattttctttgttaatttcTGCTGTTAAATGGAGGATTTCAACCTTGATGTGACTCCTGCATCTTTCTATCTCTTGCTTCTCCTCCTCCAGGTTTTTAATGATGTCAGCCTTGCGATGTTCAGCCATCTGCCTTACTTCCTGCTTGGCCTTCTTAATTGATTCAGCTagtttttcttgctttttctgTTCCAACATTGCTAGTGCCTTCTCTACAACCTCCGTTTTCTGGTTGGTGAAGTGACGGTACTCGTTCTGTTCCAGCAACTCATCCAGCTTCTTCAGGAGCTGTTTCACCTGGTCCTGGTTCTCTGGGTTCTTGTTGTTGAAAGCCAGGAAACGCCCACCGAAACGTGCAATAATATCCTGGATTTTCTGGCCCTGTTCTGATATGAACTGCTCAATGGGCTTTCCTTTCAGCTTGTCTGCACGGGTAAATATGATGATTGTGTGATCACTCATGTTTTCCTCGAAAGCCTTCTCAATCATATCTACAGtctgctgctgctcctctgtGAAGCGAGCGAGTGGTATGAtgagcagaaatgcatgtgGTCCAGGTGAACACATGGTCAGACATCTAGACACTTCCTGTGCTATCTCATTTTGCTGGAGGGAGGTGTCGAACCAGCCAGGAGTGTCAATCAGCGCTAGGCTCCGCCCATGAACTACTCCACATGCCTTCTTGCATTGCTTTGTCACTGAGTTCATGCTCAGTTTAGATGGGAAACATTCTTCACCCAAGATGGTGTTTCCAGTGGCACTTTTACCTGAACCAGTTCTGCCCACCAGCACCAACCGCAGCTGAGTTACTGGGGACTGGGAAGCTCCATGCAGACTGGTAGAGTTCCTGAACTGAGAACGCCTCATCTCTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380660 True 2231 lncRNA 0.41 2 16594197 16600593

Neighbor

gene id symbol gene type direction distance location
LOC113533302 LOC108280185,LOC108427202 coding upstream 29176 16542334 ~ 16565021 (+)
LOC113533391 LOC108280648,LOC108427199 coding upstream 125831 16460810 ~ 16468366 (+)
ndufa13 ndufa13,LOC102786334 coding upstream 133817 16457677 ~ 16460380 (+)
LOC113533360 LOC108280712,LOC108427196 coding upstream 138211 16425377 ~ 16455986 (+)
mau2 mau2 coding upstream 174789 16404788 ~ 16419408 (+)
LOC113533121 kcnj10,LOC108280182 coding downstream 20090 16620683 ~ 16629472 (+)
tgm1l1 LOC108280800 coding downstream 83063 16683656 ~ 16706323 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding downstream 113806 16714399 ~ 16717207 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 118223 16718816 ~ 16740603 (+)
LOC117599971 LOC108280611 coding downstream 149590 16750183 ~ 16755500 (+)
G321435 NA non-coding upstream 137029 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 148073 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 207674 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 407156 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 407194 16185620 ~ 16187003 (+)
G321563 NA non-coding downstream 65837 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 145183 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 149567 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 159249 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 188593 16789186 ~ 16789607 (+)
G321257 LOC108280695 other upstream 461833 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 474164 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 483108 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 657424 15929947 ~ 15936773 (+)
G321088 NA other upstream 723202 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 142212 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 156038 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 190809 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 238175 16838768 ~ 16859682 (+)
fuz fuz other downstream 878241 17478834 ~ 17483677 (+)

Expression


Co-expression Network