G321585


Basic Information

Item Value
gene id G321585
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16789186 ~ 16789607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380818
taagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAATACAAGTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCATACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380818 True 335 lncRNA 0.44 2 16789186 16789607

Neighbor

gene id symbol gene type direction distance location
LOC117599971 LOC108280611 coding upstream 33686 16750183 ~ 16755500 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 48583 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 71979 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 82863 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 159714 16620683 ~ 16629472 (+)
LOC117599974 LOC108261605 coding downstream 9179 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 31128 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 40495 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 71216 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 84275 16873882 ~ 16882758 (+)
G321589 NA non-coding upstream 16737 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 33956 16745776 ~ 16755230 (+)
G321563 NA non-coding upstream 85370 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 188593 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 332018 16456443 ~ 16457168 (+)
G321591 NA non-coding downstream 3107 16792714 ~ 16859578 (+)
G321602 NA non-coding downstream 103206 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 169138 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 735964 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 841607 17631214 ~ 17631512 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 218 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 40846 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 656822 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 669153 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 678097 16100533 ~ 16111089 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 1795 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 49161 16838768 ~ 16859682 (+)
fuz fuz other downstream 689227 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 781042 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 799465 17589072 ~ 17666213 (+)

Expression


Co-expression Network