LOC117599973 (LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616)


Basic Information

Item Value
gene id LOC117599973
gene name LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16756631 ~ 16788968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380826
CTACAGCTCTGCATATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTGAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTAC
>XM_034314726.1
CAGTAGGGGGAGACGCTGTGCTGAACAGAGACTGTGTCTTTAACGGTGAGTCGCGTAGAGGAGGCCATTACAAGAGCGACTCCGTTCCTGAGAGCAGCACAGCCGTGTCTGtgtctttgtttattcaaaCAGTGGGGGCGAGACCGTGATCCACTGGTACCTGGTGGCACTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACACCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAGaAAGCCAGTGGAGTTCTGTATTGCACACAACTGAAGGATGTGATTTTGGTGGCATTGAGAATTTAAGAAGCTGGCATGTTCAACATAttccattattttaataaaaacagcacgaaaGCCAGTGGAGTTCTGTATTGCACACAACTGCATTATTGTACTGCTCCCATGAGATGGGGGGTTACCATCAAGATTTATTGTCCAGTTAAGTGGTCGGGTCTGCTGGGAGCAGTGCTGGTTGTACAGTTTCACAGCAGCAGAGAGCATAGACCTGCGATACCGCTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCCCCAGAGTCTCATGCATGGGGTGGGAGAAAAGCTCTACTGTGTACCATGTGTCTGCATGGCAAGttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGACGACATCGTAATTTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAATAAAAGCTCAAATATTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGCCATGGAGGCAGTTTAGTCTTAAAACTGGAGCATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGATGCTCATTCAGCATACAGTTTCTGCACAATTCAGGCATATGCCAATGACACACAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATCGTACTGGTGTGTTGTAGAGATAGGAGGAATATGGGACCCAGATGTTAAAGAAGACCTTAATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAACATCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACAAAGTGGAGAGAACTGCCACAtcccagaattcaacagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGCGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATCAAACCATaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGGTGGCATTGAGAACTTAAGAAGCTGGCACGCTCAacttactcatttatttttgtaaaaacagCACTGTCAGTcgtgtgttattctttacatatcaTTTAGAACACAGTATTTTATCTCAGAAATTACAACTTCTTTACAGTGTGCTTTTGAAAAAACAGGATAAGAATTCCAAATTTCCCTTTTCTCTTAGTCAATGGTGATTCTCTGCCATGTAGCAAAAGAGCATTCCTTTTCTAAACAATACATGAACACTGAGTGGTTGCCatgttattaattataataaagctTGTGTATTGCTTGTA
>XM_034314727.1
GGACAGTAGGGGGAGACGCTGTGCTGAACAGAGACTGTGTCTTTAACGGTGAGTCGCGTAGAGGAGGCCATTACAAGAGCGACTCCGTTCCTGAGAGCAGCACAGCCGTGTCTGtgtctttgtttattcaaaCAGTGGGGGCGAGACCGTGATCCACTGGTACCTGGTGGCACTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACACCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAGaAAGCCAGTGGAGTTCTGTATTGCACACAACTGAAGGATGTGATTTTGGTGGCATTGAGAATTTAAGAAGCTGGCATGTTCAACATAttccattattttaataaaaacagcacgaaaGCCAGTGGAGTTCTGTATTGCACACAACTGCATTATTGTACTGCTCCCATGAGATGGGGGGTTACCATCAAGATTTATTGTCCAGTTAAGTGGTCGGGTCTGCTGGGAGCAGTGCTGGTTGTACAGTTTCACAGCAGCAGAGAGCATAGACCTGCGATACCGCTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCCCCAGAGTCTCATGCATGGGGTGGGAGAAAAGCTCTACTGTGTACCATGTGTCTGCATGGCAAGttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGACGACATCGTAATTTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAATAAAAGCTCAAATATTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGCCATGGAGGCAGTTTAGTCTTAAAACTGGAGCATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGATGCTCATTCAGCATACAGTTTCTGCACAATTCAGGCATATGCCAATGACACACAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATCGTACTGGTGTGTTGTAGAGATAGGAGGAATATGGGACCCAGATGTTAAAGAAGACCTTAATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAACATCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACAAAGTGGAGAGAACTGCCACAtcccagaattcaacagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGCGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCATCTGTGACTGCAGTTTCTAGCAGTGATCAAACCATaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGGTGGCATTGAGAACTTAAGAAGCTGGCACGCTCAacttactcatttatttttgtaaaaacagCACTGTCAGTcgtgtgttattctttacatatcaTTTAGAACACAGTATTTTATCTCAGAAATTACAACTTCTTTACAGTGTGCTTTTGAAAAAACAGGATAAGAATTCCAAATTTCCCTTTTCTCTTAGTCAATGGTGATTCTCTGCCATGTAGCAAAAGAGCATTCCTTTTCTAAACAATACATGAACACTGAGTGGTTGCCatgttattaattataataaagctTGTGTATTGCTTGTA
>XM_034314728.1
gctagaaaaaCTTGTTCCTTCATCatcctctcctcttcttctctctgttgaagttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGTTGCTACAGACACAGTAACATCTTCACACAGAAGCAGGACTCAATAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCAAGGCAGTGTAGTATTAAAACTGGAGAATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGATGCTCATTCAGCATACAGTTTCTGCACAATTCAGGCATATGCCAATGACACACAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATCGTACTGGTGTGTTGTAGAGATAGGAGGAATATGGGACCCAGATGTTAAAGAAGACCTTAATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCTCTGCATATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTGAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACAGTGACTACAGCAGTGACTACAACCACTCGCCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATATCTGTCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACATCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGTATTGTAAATATTGCTTCCAAGAATAAATCT
>XM_034314729.1
gctagaaaaaCTTGTTCCTTCATCatcctctcctcttcttctctctgttgaagttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGTTGCTACAGACACAGTAACATCTTCACACAGAAGCAGGACTCAATAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCAAGGCAGTGTAGTATTAAAACTGGAGAATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAAGAACATTCGATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTCACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGACTACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCTCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttgtGGCTACAGCAGTGACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCAAaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGTTGGCAGTGAGAACTTAAGAAGCTGGCATGCTCAacttactcatttattttcctaaaaacatcactgtcagtcgtatatatatatatatgtagtata
>XM_034314730.1
gctagaaaaaCTTGTTCCTTCATCatcctctcctcttcttctctctgttgaagttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGTTGCTACAGACACAGTAACATCTTCACACAGAAGCAGGACTCAATAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCAAGGCAGTGTAGTATTAAAACTGGAGAATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAAGAACATTCGATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTCACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGACTACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCTCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttgtGGCTACAGCAGTGACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCAAaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGTTGGCAGTGAGAACTTAAGAAGCTGGCATGCTCAacttactcatttattttcctaaaaacatcactgtcagtcgtatatatatatatatgtagtataC
>XM_034314731.1
gctagaaaaaCTTGTTCCTTCATCatcctctcctcttcttctctctgttgaagttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGTTGCTACAGACACAGTAACATCTTCACACAGAAGCAGGACTCAATAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCAAGGCAGTGTAGTATTAAAACTGGAGAATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAAGAACATTCGATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTCACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGACTACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCTCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttgtGGCTACAGCAGTGACTCACCATGTCAGTACTTACACCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCAAaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGTTGGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380826 False 261 lncRNA 0.49 2 16779865 16780202
XM_034314726.1 False 2051 mRNA 0.44 13 16762284 16773316
XM_034314727.1 True 2051 mRNA 0.44 13 16762281 16773316
XM_034314728.1 False 1214 mRNA 0.43 11 16756631 16788968
XM_034314729.1 False 1129 mRNA 0.42 7 16756631 16761049
XM_034314730.1 False 1127 mRNA 0.42 7 16756631 16761050
XM_034314731.1 False 1016 mRNA 0.43 6 16756631 16760959

Neighbor

gene id symbol gene type direction distance location
LOC117599971 LOC108280611 coding upstream 1131 16750183 ~ 16755500 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 16028 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 39424 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 50308 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 127159 16620683 ~ 16629472 (+)
LOC117599974 LOC108261605 coding downstream 9818 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 31767 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 41134 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 71855 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 84914 16873882 ~ 16882758 (+)
G321584 NA non-coding upstream 1401 16745776 ~ 16755230 (+)
G321563 NA non-coding upstream 52815 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 156038 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 299463 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 310507 16436199 ~ 16446124 (+)
G321585 NA non-coding downstream 218 16789186 ~ 16789607 (+)
G321591 NA non-coding downstream 3746 16792714 ~ 16859578 (+)
G321602 NA non-coding downstream 103845 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 169777 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 736603 17525571 ~ 17537160 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 8291 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 624267 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 636598 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 645542 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 819858 15929947 ~ 15936773 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 2434 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 49800 16838768 ~ 16859682 (+)
fuz fuz other downstream 689866 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 781681 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 800104 17589072 ~ 17666213 (+)

Expression


Co-expression Network