LOC113533302 (LOC108280185,LOC108427202)


Basic Information

Item Value
gene id LOC113533302
gene name LOC108280185,LOC108427202
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16542334 ~ 16565021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925361.2
TAACTACGTTCAGCTTTAGGAGGAAAATTAAAGGCACCCAGTGAAGAGCCGCATGAATCCCAGCTAGGAAGTGCACACTCTTGCCAGGACCATGAGCGATGAGCCACCTCTGCTGACCACCCTCACGGAGAATGCCACTgatgtgCCAGTGGCATCAGCCAGGCCAGATAACTATGTGCTGCTGTTggtgatgctgtgtgttttcgCTGGTGGAACGCTGGTTCTGCTCTCTGTTCTCCTCATCTTCTGCCATCGCTGCTGTCAGAGTGGACGCCGCTACTCGAGGGCCAGCGATGACTTGGAGAAAACTAACACTACATATGTGGAAGAGAGTCAACCTACTCAAGACATCACCATTAGGATGGAAAGCACGGACACACTGTCTACATCCAGCTGTCAAGGTGATGAGAACACAGAGCGCTTCCAGTCCTCAGTGTACACAGGCCGACGGGTCTCCTTCAATGAGATGGCCATCTATGAGCAGAGCAAGAAGAACCAAGAGAAAGGCCGAAGgtATACTCTTACAGAGGGTGATTTCCACCACTTGAAGAAGGCTCGTCTGACCCACTTACACGCTGCACCTCCAGCACTGAATATCCTGACCATCATGGAGTGTGACTCACCTGAGAACAGCATCAGCCTGCGAGAACAGCTGCAGCACAAACCATCCCTATCTATATTTCAGCTTGGTGAGGGCACCCTGCCTGAATCTCAAGTGCCCTGGAGTAACCAGAGCCCAAGCTGTGCACTGCCTGGAGATACACTAAACTCTGTTCTGGACACCAGCTTTATTTCCAACACTAGTGAAGGAAGCTCTGAACCACCTCGATCGAGGACAATTGAGGCAATGGGAAGTGCTGGTTTAAAGATGGAGGGCAACCCTGGATCCTCCCAAGCAGCAGGAGCATGTGGAGCATctgaaggaggaggaggtggcTCATCTTCAGGGCAGGGCACCATGCTGCACTTCCTGTCCCGACTCAGGCGGCACGCGAGTCTGGAGGGAGCCAGTCCCTATTTCACCATCAAAAAGTGGAAGctagacagcagtaacagagcAGCCAGTCTGGATATGAGAGGTTCTCCACGGAGGCGAGCATTTCAAAGACAGAGAGCAGCAAGTGAGACTCTGGAACAAGGGGAAGAGGACATCCAGCAGCCGGGAGCAGGTAGAGGAAGTGATTTTTTGTTGCGTGTCAAACCCCCTCAGCCACAAGCTGACCCCCCAAGACGACTCTCTGCTGGCTCTTTGGAGTCATCGACTACAGGCTGTCCACCCCCACCGGCCCCACTCAGAAGGTTAGAAGTGAAGGCTGTGTTGGAAGTAAGTCCAAGGGCTGAAGACAGCAGGACTCAAACAGCCCAGAAGTTACCAGAATCCACTGGACCTCAAGGGGAGGAAGAAGTAGAGGAGAATAGAGATAATGGAGAGATTATACTAGGAGCAACAGGAGGAGAAGGGACTAGCGCTGAAGTAGCCTCTGAATTTGGTTTGGTGAACAGACAGGAAAGCCTGGAGCAGCCCAACATGTACCGGGACATCTGGAGCCTACGAGCATCACTGGAACAGTATGCTTCCTCTGACCTGAGCAGCAATGACAGAGACTCCACACGCAGTGATGCTGATAGTGTCTGTTCACTAGGGGCCTTGGTGCCTCCAGCAGGTATGCTTAGTTACCAATCCCAAGACATAGACGATGAGATTGATGGGGATGGTGAGCTTCCGTATGATGATGTGATCAAAGAGGTTAGTGGCAGAAGGAATGGTAGAGACAGTGTGGACTCAGAGAGAGGCAGCGACAGTGACGCAGGAAGCAGGAAACTTCTGCAAATGGACAGCGGCTATGCTTCCATTGAGGCTCCATGCAAAGCACCAGAGGAACTACGGCTGTTTGGAAGCACGTCTGGCAAGACAGCATCAGAACGGCGTCGGTTCTTTACAAATGCTGGCCGCAAGGGGACGGTGTGTGAAAGTTTTGAGACTCGATTGTTCAAGGAGGAGCTGGAAGATGATGCTTCAGAAAGCAGCATTAGCATAGAGTCAGAGGGTCTCAGTACCATACCCCAGGAGGAACTGAGCGTCTCACTCAGAGACACACCAGAAATGCAGGCAGAAACCAAACCCAGGCCACGCTTTCGTCGCAGAGACTATAGCATCGACGAGAAGACAGAGGCCCTGTTTAATGAATTCCTGCGCCACGATCCACAATTCGACCAGCAGAGTTCGCCTTCTCTACGGCACAGACATCGCTCACGAATCCACCTGCGCAAGCAGTGGCAACGCACCAAGCAGTACAGTGACCCTGGAGCTGCTCGCTACTCACCATCCCTGGAAAGACAGCGCAGTTATGCACTGCGGAGGGGAGACAGTGCCAACTACCCACTGGATACACGGTACCACAGCACCCTACCACGTATTGCTAGTGCTGCTGATGAGGAGGCCAGTGAGGGAGCAGCCAGTGAAGGCACTGAATCACCCAAAGCACAGGGCTCTGGTCCAGCTCCTGAAGACAATTCCAACAATAGCAGTAACAACAGTAGTCCTGTGGTAAAGTCACAGGAGGATCATCCCACCCTGCTGTTTTCCACACCCTCAATGGACAGCACCGTGGGGGACTCTGGGATAATGGAGGGTTGTGGGAGTGCTGGGTATcctacagagacacacagatggtCAGTCACAGACCCCAGTCCTGTAAAGACAGGTAACAGCCAATGGAACACAGGCATTCACATTCCAGAGAACAGGTATCACATGGATAAGGACCTTATGGACAAAGGCTACATGCATAGTGTAGTGGAACCCAGTCCATCCGATAAACTGGTGAGCAGTCTAGATGAACGACTATACACTAGCCTGAGGAGGACTCAAGGCAGTCAGGAATGCATGGTGACTGTGACCCGCACCTCCCCAGACCTCAGTCAGGACTAAGAGCATGATAAACAGCAGCATTCAATGACTGAAGAATTCAGGAGGACACTGCGGAGTACAGGAGAGATGAATAACATGAATTTGTCATCTTGAGTTGTTAAGGCAACCCAATTACACACTACCACAACCTCAACCATTTTCTGATAAATAATGCATGTCTGTTCCTTAATAATACAGGGTTAAGTGGGTATGGTGCAATCTAAAACTAGGGAAATGTCTgaaaatgtagtaaaaaaaatccatatgcAGACAATTATGCTAAAAAGATgactagggttttttttaacaggtcAATATTAACACCACTTGCAAATTGCACTGTGAAAACTAGGCAAACTAGGGTGCTTTGTGAAACATACAATTACAGGGCAATTCAGAGTAATAACGACAAGAGTCAATTGCACTTTTGTTAATTACAATTTATGATAAAGGATCAGCATTTTCCtctcaaagaaaaacattagaCTGAGTTACTTCTTCCAAAGGAAGTCAGCAGTTTCTtgataatttaattataatcacATTACTCCAAAATATGGGTCTCTAATCTATTTGGGTCCCATGGGTCCTATGCTATTTTGGAATTGCAACTCTATTCCAATCCTAGCACTCCATTCTTTTCAATCACAGCTTTCATATAATGCTGATTCATAATCCTCTTTGCTCATTCAGGTCACAGATTAAAGCACTTCATCCACAAAATATTTCCCTATTTCAGGATGATTTAAAATTTTGAGTTCAAAAATCAAATTATGCTCCTAAATTTTAAACTATTAGGCATATAACCAGAGCTCCTCACCAACCCTTGCTTTTGCTTTGTTGATGCTAAAGGCTGCATTACACGGTACGATCTGTTATGATCTTGCGGTTGCAGACAAAAATCACAGACTGTGAAAGAATTCGTTGGCTGTGAGTTAAAATTTGGTGGTCCCAGATCACTTAATACAATGTACTCACCAGCCAGTTTGCAACAAAAGATAGCTGATTAACAAGTTCTAGCAGAGTGTCAGAAATTTTGGACCAAAAGAATGCGATTGCTGCTATGATGTGCATCTAAAAAGTCACTTATAGTAGAATGTATTCACTTTATCGAATCGTAGGACTATCATGAGAGAATTTTATAAAGTCTTGCAGAACATGTCAACATAATCAATAATACATCGAAAATAAGGAGCAAGGAAAATTAAAACAGCACTTTTGATTGAGGGGAGCTGACTATTGTTTCCTACTATTAATTCTGTTCATCTCATTTTTCAAGTGTCCTTGTTGGTATGATATATTTGACACTGGCATCAATCTTCGGAGGTGGGCCAGTGGTGTCAGACATCTTTAAGATTTCTGGCAAAGATGTCATATAGTCACTTTCCATTTTATAccttaatattatttattgatcTTTTATCAGTcctaattataatatttattaatgtcatATGTTCTATAAAGAGATCTAACAGAGCTAAGCAGACATTAAATCTTGACTAAGGAGATGGGTAAATGGCCCAGAGCTTGGAGATTGTGAGATATTGATTGTCTAGCTCCAAGGCCTCTGacataaaaatatcttgaaattgttatttttggaaatttgcACAAAACTTGAAATATGCAATATTAGCTACAGAGAACTAAATTACAGTATTAAGTTCATGGATGACTGAATTTACAGAACCAACTTTAATAAACAATGATGCCATTCCAAATATCAAATTACCTTACAGTGGTTTATATGATGGAAATCAAGCCTAGGGTTATTGGTTTTGAtaagcaaacatttaaaaagaatggTACCAAGCATCACTGGTCCATTTTTCCACAAGAAAGGCTGTTGTATAACAGATTTGCCATGGGTCTAACACCTGAAGCATCTTAAACATACCTGTTCATTGCACACTAGTCCTTGTGGACATGAAACTGTCAGAGGTTGATGACAACCccatctctcattttctttctcttgaagctCTTTGTTCTTATATTACATATTGATTAGCAGCAAAGAAAAGACAGCATTTAAACAGCAGTGATAAGACAGAGAAAAGCATGTTTTTGTTGCCTGAGGTTAGATGATGCAGTGATAGCAACCTCAGAAACTTCCATTAAGCAGACCTGAAGTAGTCATGTAATAGTTCATAAGATGTATGACATAAGATGTAGTACATCACACAAGTTATGGCAGATCATCAAACATTTATAGTTTATTAGTTGTAGTTAAAAATCTACACTCATTCTTTACTTCTTTGGAATATGTCATTCAGTTGAAAGTGAAGGTCCAGCCACTATAAATACGCTTGAGCTTAAGTACTAAACTACTTGTAATAAACTACTTAAATACTATATGTACTATTAAATTTGGAGGTGAATCTAGATGAGGAatgcatttgaatttgaatacaCAGTCAATGAATGTGTCAGGAATATTTAGTGGAGTCAGAAAAGTAGAGGAATAAAAGTTcaaagtactgtatataaatactcCAAATAGGTCCTGAAGCACAGTGGTCATGTGTACATGTACTTCATTACTCTCCATTAGGATACTTCGTGGGTGATTCTACGATTGCAgtgccatttagcccttgtaaggcttaaaaattaaactttactTTTTATCATTGTTCTACGAAAACATGTATTTAACCAATCAAATAATGTGTTAACCCATATCAGATATCAGTCTCAATGTTTTACAAGCTTTCTTTGCTGGTGATGGCTACATTTTGctaataaataagtaacaggGTTGACTAGCATCTATGCTAATGACATGATGACATTAGGGActttcaaatgatttaaatatttttttgaaataaGGTTTCTCAATCAGtaatttgggtaacagggtTATACTTTTAAAGTGAACCCACCAAGTTAatatcaaatacacaaaaaaatgaatcagcgaactttcttttctttttccttgtaATCCTAACATTCGTTTGAACATGTTACATGGaacattccaaatatttcataggggtgaatatTGTGGGACACgactaaaatgtataatttttcataacctatatgGATGACTCACAGAAAGGggtgtttcaagcatgagatgttaaatggattcatacCTTGTAAAAAAATACTAcgttttaagcatttttattattatattttcaagATAAAGTGTAGGAATAGTGGACTTGGGGAAAGTGCAGAaatttttatctgaaaaacacacatgggTTGTTGTGAAGGGCACTTTAACTgtgtttaaaatttcttttacctttacgtacataatttgtaaatgtaatatgagTGGTACACAAATGGCACCCTAATCAAGGAATCACCCCTCCAAAAAGATAAGTGAAAAGATCATTGCTATGGTAACAGTATTAAGTACTCAAGAGGACATGGCACCAACTTTGACCCTCCATCTGTTGAGGGAACGGTAGTCTCTTCCACTCAAATTTCATCCCCCCCACCAACAGTTAGAATACCGCCTGATGTAACCTGCCACCTACAATCATGTAGAACCTTATCAGACTGCAGCATGgcttttcaattttattttatttgaagcaTTTGATGTTCATTGACAATCGCTCACTGTAAACTAACTCTTTCTAACAAATGGCCAGGTAGACATTTGAAGCAATACACCATTTATATATGTGTCATAtcaaacattttttccccccctctctcAAATGGAACAAGTATCTGATGTGAATGTGCATATTCTGACCTGAACCCCATGTAGGAGCTTGAGGACATGTTAGAACTGCAGCTGGTCTTCGTGTACGTGGACGACTGAACCTACTGCTGCACTCCTGTGCAGTTCTGCATGTGAGAAGAAAGGAAATCATGACATTGGTGTTCTCTGTAGTTTCAATGCTACTGAATGCATTCGAGTCCCCTCTTCCTTTTCTCAGAATAAATGGTCATGCTTTgatccttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925361.2 True 6858 mRNA 0.43 11 16542334 16565021

Neighbor

gene id symbol gene type direction distance location
LOC113533391 LOC108280648,LOC108427199 coding upstream 73968 16460810 ~ 16468366 (+)
ndufa13 ndufa13,LOC102786334 coding upstream 81954 16457677 ~ 16460380 (+)
LOC113533360 LOC108280712,LOC108427196 coding upstream 86348 16425377 ~ 16455986 (+)
mau2 mau2 coding upstream 122926 16404788 ~ 16419408 (+)
sugp1 sugp1,LOC107729615,LOC107563402,LOC100304763 coding upstream 137767 16395828 ~ 16404567 (+)
LOC113533121 kcnj10,LOC108280182 coding downstream 55662 16620683 ~ 16629472 (+)
tgm1l1 LOC108280800 coding downstream 118635 16683656 ~ 16706323 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding downstream 149378 16714399 ~ 16717207 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 153795 16718816 ~ 16740603 (+)
LOC117599971 LOC108280611 coding downstream 185162 16750183 ~ 16755500 (+)
G321435 NA non-coding upstream 85166 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 96210 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 155811 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 355293 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 355331 16185620 ~ 16187003 (+)
G321454 NA non-coding downstream 29176 16594197 ~ 16600593 (+)
G321563 NA non-coding downstream 101409 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 180755 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 185139 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 194821 16759842 ~ 16772449 (+)
G321257 LOC108280695 other upstream 409970 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 422301 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 431245 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 605561 15929947 ~ 15936773 (+)
G321088 NA other upstream 671339 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 177784 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 191610 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 226381 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 273747 16838768 ~ 16859682 (+)
fuz fuz other downstream 913813 17478834 ~ 17483677 (+)

Expression


Co-expression Network