RNA id: XM_034314722.1


Basic Information

Item Value
RNA id XM_034314722.1
length 2139
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC117599972
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16742805 ~ 16748340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgcagtcaaACTATTTCATACCGAGCTCTTGGTCTGCTGTGCAGGTGAGCAGCCAATTGCGTGTAATTAGAAAAAGCTGACTCCGCCCCCTGGGGAAGCGCGCGAAGGCGATGGAGAGAGCACGAGAAGAGAAGCGTGAGCTAAGAGCTGCGCAGAACtcttgatttatttgattttatcaGGAAATACACTTGCGAGGAACAAGCAGTGTAAGTTATTTTGTTGAGAAAACAAAATTTCTTAGTAGTTTTCAAAAGAACTTACCTTTATCCTGTTGATCCGTGTCGCATCATCATGGAATCCAGTGGAGTAGGCCATCATTAAGTCATCCGCTGAAACTTGAAAGGGATTAAGAAATAGCATTAATACACAAGGGAATCGACTTCATAGTAAGGTTAACCAGAGGAGGAACTGCTTAAGCTGCTACAGACACAGTAAGAACTTCACACAGAAGCAGGACTCAAGAATTGGAACAAATCTAACATGAGCTACTTTTTGAGTTTTATTCTCTTCATTTCCAGTGTTGACAGTTTTTCGTCAGCATCCAGACAGTTAAGTCTTAAAACTGGAGCATCTGTCACCATCCCATGTCATTATGATAGGAAATATATACAACATAAAAAATACTGGTGCTATGGAATAATATTCAATTTCTGCAAAATTCAGGCGTATGCCAATGACACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATGAGCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGACGAATGCGGCAATTCAGTGGGGAGGACTGATACttcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGACGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACCACTCACCATGTCACTACTTACACTGGGGGTGAGACCCTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCTGTAAGAAATGCAAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAACTCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGATGAGAACATCTACAGCAACGTGGTTTGCCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCCGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGATAACTGCTAAAGCTAACTCAAAACAATTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaacaattggtGTTTGCAAATAAAAAGCAATTCCCGCATCTAGTATATCTATGTATTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattgtgacagtgtttgtctgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380777 lncRNA upstream 38989 16666430 ~ 16703816 (+) True G321563
TU380660 lncRNA upstream 142212 16594197 ~ 16600593 (+) True G321454
TU380640 lncRNA upstream 285637 16456443 ~ 16457168 (+) True G321435
TU380639 lncRNA upstream 296681 16436199 ~ 16446124 (+) True G321434
TU380634 lncRNA upstream 356282 16386257 ~ 16386523 (+) True G321429
TU380812 lncRNA downstream 1820 16750160 ~ 16792097 (+) True G321582
TU380824 lncRNA downstream 11502 16759842 ~ 16772449 (+) True G321589
TU380826 lncRNA downstream 31525 16779865 ~ 16780202 (+) False LOC117599973
TU380818 lncRNA downstream 40846 16789186 ~ 16789607 (+) True G321585
TU380813 lncRNA downstream 43788 16792128 ~ 16792438 (+) False LOC117595733
XM_034297722.1 mRNA upstream 2202 16718816 ~ 16740603 (+) True LOC113533485
XM_026925339.2 mRNA upstream 25598 16714399 ~ 16717207 (+) True LOC113533288
XM_026925337.2 mRNA upstream 36482 16683656 ~ 16706323 (+) True tgm1l1
XM_026925003.2 mRNA upstream 113333 16620683 ~ 16629472 (+) True LOC113533121
XM_026925361.2 mRNA upstream 177784 16542334 ~ 16565021 (+) True LOC113533302
XM_034314720.1 mRNA downstream 1843 16750183 ~ 16755500 (+) True LOC117599971
XM_034314728.1 mRNA downstream 8291 16756631 ~ 16788968 (+) False LOC117599973
XM_034314730.1 mRNA downstream 8291 16756631 ~ 16761050 (+) False LOC117599973
XM_034314729.1 mRNA downstream 8291 16756631 ~ 16761049 (+) False LOC117599973
XM_034314731.1 mRNA downstream 8291 16756631 ~ 16760959 (+) False LOC117599973
trnag-gcc_20 other upstream 555764 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 557238 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 558663 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 610441 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 622772 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 103105 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 730494 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 730494 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 822309 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1478222 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile