RNA id: TU380812


Basic Information

Item Value
RNA id TU380812
length 333
lncRNA type read_through
GC content 0.40
exon number 2
gene id G321582
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16750160 ~ 16792097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGAACTGCTTGAGTTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAAGAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTATTAAAACTGGAGCATCTGTCACTATCCCATGTCGTTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAGAAACATTCAATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380811 lncRNA upstream 6045 16742894 ~ 16744115 (+) False LOC117599972
TU380777 lncRNA upstream 46344 16666430 ~ 16703816 (+) True G321563
TU380660 lncRNA upstream 149567 16594197 ~ 16600593 (+) True G321454
TU380640 lncRNA upstream 292992 16456443 ~ 16457168 (+) True G321435
TU380639 lncRNA upstream 304036 16436199 ~ 16446124 (+) True G321434
TU380813 lncRNA downstream 31 16792128 ~ 16792438 (+) False LOC117595733
TU380827 lncRNA downstream 617 16792714 ~ 16859578 (+) True G321591
TU380843 lncRNA downstream 100716 16892813 ~ 16893024 (+) True G321602
TU380963 lncRNA downstream 166648 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 689288 17481385 ~ 17482562 (+) False fuz
XM_034314722.1 mRNA upstream 1820 16742805 ~ 16748340 (+) False LOC117599972
XM_034314721.1 mRNA upstream 1820 16743910 ~ 16748340 (+) True LOC117599972
XM_034314724.1 mRNA upstream 1820 16743910 ~ 16748340 (+) False LOC117599972
XM_034314725.1 mRNA upstream 1820 16743910 ~ 16748340 (+) False LOC117599972
XM_034297722.1 mRNA upstream 9557 16718816 ~ 16740603 (+) True LOC113533485
XM_034314732.1 mRNA downstream 6689 16798786 ~ 16805263 (+) True LOC117599974
XM_034314735.1 mRNA downstream 28638 16820735 ~ 16824608 (+) True LOC117599976
XM_034314733.1 mRNA downstream 38005 16830102 ~ 16845645 (+) True LOC117599975
XM_034314734.1 mRNA downstream 38005 16830102 ~ 16845641 (+) False LOC117599975
XM_034314713.1 mRNA downstream 46671 16838768 ~ 16859678 (+) True LOC117599970
trnag-gcc_20 other upstream 563119 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 564593 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 566018 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 617796 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 630127 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 59348 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 686737 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 686737 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 778552 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1434465 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile