G321246


Basic Information

Item Value
gene id G321246
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16096253 ~ 16097391 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380422
CCAAAATTGAAACAAGAGGGAACAAGAAGTGTTAAAGCAGTCTAACACCATGTTAGCTTCATGTAACGATTCAGAGTTAGCTTGGAAGCATAACAAGCAAACTAGCATAAATCTCCTTCAGGAAACTataccctgaaacacattaaatatgtttatactgaaatatttgtaatgtgcttcgagattctggtgctaatttgttgactggagctgtatttttgttaacaGTTGTCTGCCATGcgtttaaaaagttttaatcgTTTCAAAGATAAGGATTAActgtcaggtttcactgttagcgCCTAAAAACcgaagagcaagagcttcttttctcacgaTTTTTAGCGACATTTACTGTCATATttatgagaaatccaacatagaagtagtggagacagcaaacaatggactcaaagttccagaatgcaaagAAAATACACAATGCAGTTGCGccgagttacagcagagactcagctAAGCTAGTTAGCGGTCTACAAGATGACAAAGGTAATGGTGTTTTATTGGGAGTATTAGCATGAATGTTGAAATTTCACAATTGTTTGAGTAGAGTTTACAGATGAGGGCATGagaaagctggacagactaaagacttaaagtgctgctgcatctctctctttaggtagagatgaagctagggctaaatcccactatTAGCAAGTTGGTAAATGGCATTGTGGATAATGTAGGAAACCGATAACCAAGGTGAAAATTGACCAACATGTtgaacaaattttaaaataacaaaaagtcaATTCAGAATTTTGTCACAAAGTAAATCTTGGAAATCATTGCAGATcatgtgttaattataaagatgtatatgcaagtcattcagggtggaatTTTCCTTTAGTGGTTAGTACAtagttttaaatatgttttaaacaaatattcaaTTTAATCTAAATACATATGTTACTTCATCATTGTAACATTTGTATTTAGACATTCAGGATTGTATTTGTAAATTGGATTTATCTAAACTCATATTCTTGTTGTTCAGCATCGTGTTTATTGCCCTCAGTGTTCGCATTTTGCTTGGGGTGAAAGCTTTAAGGTGTTCCTCCTTGAGCAGCAACCTGGGCAACCGGTTATTTGGAACCTGtgtcaaagaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380422 True 1139 lncRNA 0.35 1 16096253 16097391

Neighbor

gene id symbol gene type direction distance location
uba52 uba52,LOC100135798,LOC100194659 coding upstream 54515 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 58073 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 96813 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 111668 15938895 ~ 15984585 (+)
arhgap45a LOC108280537,LOC108427168 coding upstream 172964 15894001 ~ 15923289 (+)
cplx4c cplx4c,LOC108280361 coding downstream 65063 16162454 ~ 16167346 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding downstream 77179 16174570 ~ 16180499 (+)
trnag-gcc_18 NA coding downstream 86681 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 88106 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 90598 16187989 ~ 16193122 (+)
G321245 NA non-coding upstream 24 16095903 ~ 16096229 (+)
G321241 pgpep1,LOC107660389,LOC107596298,LOC107552686,LOC107696873 non-coding upstream 2429 16091596 ~ 16093824 (+)
G321239 NA non-coding upstream 5854 16089606 ~ 16090399 (+)
G321236 NA non-coding upstream 27037 16069004 ~ 16069216 (+)
G321235 NA non-coding upstream 27706 16068027 ~ 16068547 (+)
G321247 NA non-coding downstream 1224 16098615 ~ 16099001 (+)
G321253 NA non-coding downstream 31810 16129201 ~ 16129800 (+)
G321254 NA non-coding downstream 32558 16129949 ~ 16130269 (+)
G321255 NA non-coding downstream 33031 16130422 ~ 16130684 (+)
G321256 NA non-coding downstream 33339 16130730 ~ 16131005 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 159480 15929947 ~ 15936773 (+)
G321088 NA other upstream 225258 15869016 ~ 15870995 (+)
slc25a42 slc25a42,LOC107696381 other upstream 413977 15625802 ~ 15682276 (+)
LOC113533167 NA other upstream 525775 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 792965 15299061 ~ 15303288 (+)
jund jund,LOC108280549 other downstream 3142 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 14644 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 33944 16131335 ~ 16132364 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 645414 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 659240 16756631 ~ 16788968 (+)

Expression


Co-expression Network