cplx4c (cplx4c,LOC108280361)


Basic Information

Item Value
gene id cplx4c
gene name cplx4c,LOC108280361
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16162454 ~ 16167346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925885.2
CCAGTGGTGCAAATGCTTATAGAGATACTGCATCTTATTTCACTCCATCCATCTCCAAGACTCACTTTGAGAGCTGCAACACCAACACCAAAGCCACAAAGTTTTTGGACTGTAATCATAACTGACCTTTCCAGATAGCAAATAACGTGGCCCCCAAACTCCTGAACCCTGGATCATGTCTTTCTTAATGCAGCAGATGCTGGGGGATAAGTTAAAGAACATgatgggaggaggaggaggaggtgaagaaTCAGGGACCACAGCAGGAGACGGGAAAGAGACCGCCGCGTCTAAGGGAATGACCCGAGAGGAGTTCGAGGAATACCAGAAACAACTGGTGGAGGAGAAGATGGAGCGGGATAAGGAGTTTGCTACAAGGAAAGCAGAAAGGGCCAATTTGAGAGTACTGCTAAGAGACAAATACAGGCTTCCACAGAGTGCACAAGACGACGCCACAGTCCAGATAGCAGGCGACGACTTGGATGTGCCCGAAGAACTGGCCAAGATggtggaggaggatgaagagcaAGAGGAAAGCAATGATTCCTTCATGGGCAGACTGCAAAGTATGGAAATAGACTTTGATACCATCAAAGCCAAAGCTCAGGGCACGATAACAGAAGTCAAGCAAGCAGCAGAAGAAAAGTGTGTCCTGATGTGAAATCACACTCACTGTGAGCTTTTTAAGTGGCAAGTCATGAAAACTGAGTAGCAATTTAAATGcacatattttattgattttattatctATTCAGTAAGTTTATTATGTCTGAATGAagctgtggggaaaaaaaagtctttcaatcacatactgtatgatCACCCATTGCCTTAAATGGCATTGTTTGGGACTTCATGAATTAGTATAATAAATCAATACAATAATTCCACTATAATTTTAGgatattttatgtcattttcttcatttttacaatTATTGTTACAAATATTGTGTAGGTTTTGTTCAGCTTGCAAACTAGCTATCATCTTAAACCACCATATTAAGCTATATTTTCTCCAGTTAGCAAATCTCCAGCTAAGTTATTATAGCATATAATACTAAATACACCTTAGTACTATCAGATAATACTATAAAACTATATCTTAAATAAAGTTGAAGGAAGGATACTTTTGTATTTGACTGATAAAtcaagctagcaagctaacaccTGTTCCAAGCTatcatcatactgtatattcacaaaACATTTTGCATAGATTCTTACATTTTCTCTAAACAGTGGATGAATATCGTGTCAGTGTCGTGTCACTTTATTAGTTAGCCTTGTGATATTTCATCACTGTGACCAAATACATGACATTGTGTTCAGTTATATctttcttaattaacattattaaaatgtgacatgctcattaaaatgccatttataatataaaattaaaaatctaataGGTGCCCAGTTTGTTTGTTGACGTgtatcatttcatatttttgtaaTGCTTTGTAAAGTATTGCTTTATATATTCACACTCT

Function

symbol description
cplx4c Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to act upstream of or within exocytosis and neurotransmitter transport. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton.

NR:

description
complexin-4-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925885.2 True 1495 mRNA 0.37 3 16162454 16167346

Neighbor

gene id symbol gene type direction distance location
uba52 uba52,LOC100135798,LOC100194659 coding upstream 120716 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 124274 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 163014 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 177869 15938895 ~ 15984585 (+)
arhgap45a LOC108280537,LOC108427168 coding upstream 239165 15894001 ~ 15923289 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding downstream 7224 16174570 ~ 16180499 (+)
trnag-gcc_18 NA coding downstream 16726 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 18151 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 20643 16187989 ~ 16193122 (+)
eps15l1b LOC108280681 coding downstream 29578 16196924 ~ 16223330 (+)
G321258 NA non-coding upstream 24850 16135324 ~ 16137604 (+)
G321256 NA non-coding upstream 31449 16130730 ~ 16131005 (+)
G321255 NA non-coding upstream 31770 16130422 ~ 16130684 (+)
G321254 NA non-coding upstream 32185 16129949 ~ 16130269 (+)
G321253 NA non-coding upstream 32654 16129201 ~ 16129800 (+)
LOC117599979 NA non-coding downstream 18274 16185620 ~ 16187003 (+)
trnag-gcc_20 NA non-coding downstream 19625 16186971 ~ 16187041 (+)
G321429 NA non-coding downstream 218911 16386257 ~ 16386523 (+)
G321434 NA non-coding downstream 268853 16436199 ~ 16446124 (+)
G321435 NA non-coding downstream 289097 16456443 ~ 16457168 (+)
G321257 LOC108280695 other upstream 30090 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 42421 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 51365 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 225681 15929947 ~ 15936773 (+)
G321088 NA other upstream 291459 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 575459 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 589285 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 624056 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 671422 16838768 ~ 16859682 (+)
fuz fuz other downstream 1311488 17478834 ~ 17483677 (+)

Expression


Co-expression Network