rx2 (LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236)


Basic Information

Item Value
gene id rx2
gene name LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16174570 ~ 16180499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925384.2
CTTTCCCTGGACGTACACTCCTGCCCTCGAATGCATTTGTCTCTGGATTCCATAAACATGGCGGACGATGGATACCTCTCGTCAGACAACTACCACGATCTGGGTAAAGGAGGCGGATCAGCGATGGGCGGGCGCTTGCACAGCATTGACGTCATTCTGGGCTTCAGTAAGGAACAGGACCCTCTGCTCAACCCTGTGGGACCTGCCGGGGGCCATAAAGGTGACGGAGATGTCCTGGTGGACCAGGGGAAACAGGTGACCTCTGACCCTTACGCTCACCTGCCCAGCATGTCTGACAACTCCCATCAGGCTGCCTATCATGATACAGGACTCTTCTCAAATAATAAACGAGAAGCCGAGGTTGGGGATCTTCACCATCATGGTGTGGAGAGTGACAGCAGGTCTCCCGAACCTCTAGAGGACGACCAACCCAAGAAGAAACACCGTCGCAACCGGACCACCTTCACCACTTACCAACTGCATGAGCTGGAACGAGCTTTTGAGAAATCCCACTACCCCGATGTGTATAGTCGAGAAGAGCTGGCCATGAAGGTCAATCTCCCAGAAGTACGAGTGCAGGTCTGGTTCCAGAATCGACGTGCAAAATGGCGGCGTCAGGAGAAGATGGACACTGGTGGCATGAAGCTCCATGACTCGCCTATGCTGTCCTTCAACCGGCCTCCCATGCCCTCCAATGTTGGGCCAATGAGCAACTCCTTACCCTTAGATTCCTGGTTATCGTCACCCCTTTCCAGTGCCACTCCCATGCACAGCATCCCAGGATTCATGGGTCCATCCCAAAGCCTGCAGCCCACCTACCCGAGCCACCCGGGCTTCCTTAACTCAACTCCAGGCATAGTGCAGGGAATGCAGCCTATGCCTCCTCCACCTTACCAGTGTCCACCGACCTTCAATGACAAGTATCCACTGGAGGACATGGACCGCAGCTCCAGCATTGCAGCTCTGAGAATGAAGGCCAAGGAACACATTCAGTCCATGGACAAAACCTGGCAGCCCATGTGATTCGAGGATCAGATTTTGTAAAGATGTGTACACTGTACAGTTTTTATAGAACCTGTTAGAACTGTGTGTAAGCAACAAATATGTTTGTTAATCATGGTATGCAACATGGAAAGTCTTCTGAGGTTTAAACTCCACAAAGCCATGGAAAAAAAGGAGACAACTTTTGTTGTCTGTTGCTCAGAAGAAGGACTACTACTGGTTTAGATAGCAATTCAAAGAGGTAGCTAAACTTTATGCACTCTACAACCATTGACTTTATAAGAATGAAGGAATTCTATAGTCAAGCCAGGAATCTGAAAAAGCAAGCATAAACACCCctatgtgtttcttttttagtCATTTCCAGTTTGATCATCTGTTAAAGGTAGCTCAGGGAATCAGGAATCAGGTTTGGGGTGGTAAGAAAACTGGGCAATAGGGCAGTAGTCAAGGCTGCCACTGTCAAGTCCAAGCCCAGGACAAGCCAAGATCGAGTCATGGTCAAGACCAAGTGAAGACTGAGTCCAAATTAAAGTGAAGTCAAAATCAACACCAAAAACCATTAATTCCTTTTTGAAgccaagcctttacttcaaTTACTTGGCTTCATTCACAACATTGTGCCAATGATCAGGCTGTTAGGCTGAAAGAAATTacttgtcaaactttgtgcaaGACCATTATTGTCAAACAAGGCCAAGACCATAATTAGCAAGACCAATGCCCAAAATGAaacaagtccaagtacaaatgccaatAAGTCGGacacaagtccaagtcaatacagaaaaggTCTCGAGACCAGACTCGATCCCAAGACTGGACTCAAATCCTACAGCTCTACTGTCAAGACTTAAAACATTAACTACTTTTACGCAGGCTAATGCTTGTCCCTATTTCAAACAGGCTAATGCTTGTCCCTAATTCTGGCAGGTGTGCTTTTTGGCTAGCACCTTGTACATACTTGGCTTTGACTTTCAAAACTTCCAGGTATCATTATTCCTGTCCAGATTATCACAAACAACACATCAATTTCAGGACGTGATGGAATAACATGGCTCATCTTCAGAAAACCTACGAGACAAAATACGCGAATTATGGATAATGATGTAAGTTCTTTAGCATAACATGCACTTGGACGATTGCCTGGTTTTCTACAATTCTGATTTGAGGATAGGTATAAAACCATGACCACTACTTGAGTTTGTGTCATCTGATTAAAACTAAGTCAGAGagttaatgattattttaaactATGGCACAAGAACACACTAAAGTGTAAAGTTAGGGAGTATTCACTAGTACCCTGGAgtatttttaatcattcataTGCATCCCCAGTGTTGCCTGAGCCTTGGTTTTGTCTGTACAACCACTGATTAAAGGGCATTTTGAAAAAATGACCTATCTACCCCCAGAGCTTGCTGAAGGATATGAGGTCATTAGCTGATTGTGTAGCTGTCATAGTGAGTACATGTACGGATGCGAAAGGAGAGTCGCTTAGTCTGGCACCACTCTCTGTTCATTTGTTGCTTAGTGTTGATCGCTGCTCTTTGTCTAAGActctaaaataaaaagacaaaatctgGACTAATAGGCATCACTTCGGACAAATGACCTTAACCCTTTACATGCAAGGGTGTCACCAAGGAgggaagacattttgctgaaaATATATCCATAATCTGATTATTTGGCTCAAATATCAAGTATTTTTCTTATAGTGTAATTGTTACAATTCGCCTTGGAGCTCCAAATTGATCGTGAGAGTGAGCAGGATATTGAAGTGATGCCTAAAACTGAGTATAACTAAGCAAAAGGAATCAAAAATGTAAAGTAACAATGCCTAAAGCAGAGTAGCAAAGGTATGGTACCATATTTAATCATGAACTCTAAAGATTGACACTCTTTATATTTTGTATgctattttgtattgttttagaaaatgaatgtaATTCAAAATATATCATACTCTACCTTTTTGTGCTGACTCGTATGCATCAACCTGGGTAATACTGTTATAACTGCAGAGGTCTTTCTgtattatatgtaaacattgtGGTATACTGTGAACAAAGAGGAAGCAAGGAAATGACAAAGCCAAAGAGTATGGTCTTTTGTTAGCTATGAAAATATTAATGTGAATATTTAGACATTAGCTGATTGGATCTGTATGAATTATATGATTGCCTATGCAGTTTTGTTAACTGTCACtctattttttgtcatattttatcTTTAGGCATGAATATTTTGCACTAACAATGTCAATAAAGATAGATCACTCAAACGACATAACTTGGATCATCTTTGTAGAGATATAGAACTGATTGATTTTAAGTTATGAATGAATACAGAAGAGAAAAATGCTAACTAACCATCTATGATGCTTAAAAGCATGATAGTGCCCTCCCCATAAAAGATGTCATATTGCTTAATAATTTAGCATGTTACCATGATAGACTTACTTTAAATTGTTTCTTGTCACAGAGGTCCATGGTTTAGTGATGTGTGGAAAAGATGggttttgtattattttgtttgggTTATAAATCAGCAGTCT

Function

NR:

description
PREDICTED: retinal homeobox protein Rx2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09332 RAX, RX; retina and anterior neural fold homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925384.2 True 3565 mRNA 0.42 3 16174570 16180499

Neighbor

gene id symbol gene type direction distance location
cplx4c cplx4c,LOC108280361 coding upstream 7224 16162454 ~ 16167346 (+)
uba52 uba52,LOC100135798,LOC100194659 coding upstream 132832 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 136390 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 175130 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 189985 15938895 ~ 15984585 (+)
trnag-gcc_18 NA coding downstream 3573 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 4998 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 7490 16187989 ~ 16193122 (+)
eps15l1b LOC108280681 coding downstream 16425 16196924 ~ 16223330 (+)
tpm4b tpm4,tpm4b,LOC108280645,LOC102199996,LOC100703626,LOC101474423,LOC108427191,LOC106537044,LOC103156889,LOC108424981 coding downstream 177078 16357577 ~ 16375352 (+)
G321258 NA non-coding upstream 36966 16135324 ~ 16137604 (+)
G321256 NA non-coding upstream 43565 16130730 ~ 16131005 (+)
G321255 NA non-coding upstream 43886 16130422 ~ 16130684 (+)
G321254 NA non-coding upstream 44301 16129949 ~ 16130269 (+)
G321253 NA non-coding upstream 44770 16129201 ~ 16129800 (+)
LOC117599979 NA non-coding downstream 5121 16185620 ~ 16187003 (+)
trnag-gcc_20 NA non-coding downstream 6472 16186971 ~ 16187041 (+)
G321429 NA non-coding downstream 205758 16386257 ~ 16386523 (+)
G321434 NA non-coding downstream 255700 16436199 ~ 16446124 (+)
G321435 NA non-coding downstream 275944 16456443 ~ 16457168 (+)
G321257 LOC108280695 other upstream 42206 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 54537 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 63481 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 237797 15929947 ~ 15936773 (+)
G321088 NA other upstream 303575 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 562306 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 576132 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 610903 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 658269 16838768 ~ 16859682 (+)
fuz fuz other downstream 1298335 17478834 ~ 17483677 (+)

Expression


Co-expression Network