si:dkeyp-68b7.7 (LOC108280928)


Basic Information

Item Value
gene id si:dkeyp-68b7.7
gene name LOC108280928
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15299061 ~ 15303288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379971
AATCAAATCTGGTGGATGTAAGATTTAGGAATGACATACCCCTTGATAAAACAATGCTAATGTGATCTACTTGGAGAAGAACATTTTGTGCGTTGTGTTACACCCTTCATACAGTGTGAAGTCTTGCAGGACACATTCAGGAGGAATGCAGGGCAGTGTCCAAATCCACATTATACATACTACATAGGACATCATTGATGTACTGacataatattttgtattttatatgtagCAGGgtttctcaattttttttttgcagccagggacttGCATAGACCCTGCTGTACAATAATATGTTTGATATTTATTGGAGCTTTTTATTCTTGAACTCTCCACCATCACaaacattaggtccaagttgaaATTATTCATAGgcatacttgttttttttattattcagttattaaagTGAT
>XM_026925820.2
ttaaaccggaAGTGACCTCAGCTGTTGTGACTCTCTCGCCTTGCCTACCATTTCCTTGTACCAGTTAACTGTAATTTTACCCTTACAAAATTACTGGATGGAAATTTTGCCACAGGAGCTCGACAGTGTGTTGTTAAAGTGTGTTGTTgaattgtgttgttgttgttaataacgGAAATGGCTGCTGCGGTGTTACAGACGCGGATAACCGCCATATTGGACGTGTTAACGAAAGCAGCAGTGGCGGAGATTAGCCAGCTCATTCAGGACGACAGCGCTGTGTATCAGCGGGAAATGAAACGGAGAGAGGATGAGATTGAGGGACTGAAGAAGCGGCTACAGGTCACCGAGAAAGAGCTGAAGAAAGTGCAGGCTACCGTGTTAGCCAGGTGTTCAGTCGGTGTTCAGGTCGAAATGCTGGCTACAGATTTGATGGCATGCAGAAAAGAATCACTACCTGGGAACCATGTGGAAACATTCCAAATGAGTTCAGCACAAGAGCTCAAAGAAGAGAAACCACAGCTTCCTGACAAAACACAAAACGTCACAAAAGAGCCCAGAGCTCCACCAGAACCGGCAAAGCAAAGAGATCCAAGGTGTGACGAAGATGAGTTCAGCAGCCtggaatttgaaatgaaaattgaGCAGGTGGAAGAGCTTGTGGATCAGGAACTGAGCCTTTCAAGAGCAGATTACAGCATGGCAGATCCGAACATGAGCTCTGAGCACAAAATGGCCCCGAGAGACACACATCTGTGGCCGTCCATGGAAGACAACGCAGCAAATGAGTTCTCCGTTCCTGATGGCTGTATCGGGTTAGAGCAGTATGAACAGATTCCCACAGACCAGTGTCTGGCCCAGGTGATGAAGGATCCTCTGAACTTGCATCCTGACAACACATCCAATAAACACATCGATTCATTTGGTTCTGCACATATTAGGATTGACAGAGAAATGCACTTTGAGGGCAACATTACAAAAGACTCTGAATATGGACAGATTAGAGACAATTTGAGTCACGTCAAAGCATCAAGGCCACCAAACAGCCACAAGCACAGACACTCATTCAGTGCAGTGCCACGCTCACATGCACATTTATCCACTAGTACTTTCTCAATGCCGGACATGGCTCCTGTGCGGCAAAACACACAGGCCAGCCATGTCGGGTCGAAGCCCTTTCGTTGTGAGGAATGCGGTAAAGGCTTTACTCAGAGGATGAGACTGATCACACACAAGCGAATACACACGGGTGAGAAGCCATACCACTGCCAGCTCTGTGGCAAGATGTTTTCAAGGCAGGACAACTGCCTTAGGCATGTACGTCTACACAGTGCACAAGGGTGGTAAAGAAGCTCCTTTGATTGTTGGTAGTGTGAGGAGAAGACATCTTTACTTCCTGTCCTGTAGACCATCACACACAATTATCATATATCTAGCGGACAGAAAGTCTCTGGTGTCCTCCAGTGGCTGGCTCTGGTCCAGTTTTTACCATGACCACAGCTAGGTTTTAATCTTTTCCCCATTGTTGGATTTTGTGCTTgatctttgtgtgtttttattctctgtttCAAATAGATAttatgtatgtttaaaaaaaaaaaaaaaaaacatataaaactaAAGCATATCTAAGACAACTAAAATCAAATCTGGTGGATGTAAGATTTAGGAATGACATACCCCTTGATAAAACAATGCTAATGTGATCTACTTGGAGAAGAACATTTTGTGCGTTGTGTTACACCCTTCATACAGTGTGAAGTCTTGCAGGACACATTCAGGAGGAATGCAGGGCAGTGTCCAAATCCACATTATACATACTACATAGGACATCATTGATGTACTGacataatattttgtattttatatgtagCAGGgtttctcaattttttttttgcagccagggacttGCATAGACCCTGCTGTACAATAATATGTTTGATATTTATTGGAGCTTTTTATTCTTGAACTCTCCACCATCACaaacattaggtccaagttgaaATTATTCATAGgcatacttgttttttttattattcagttattaaagTGATCAACagtaatggtgggttgtgatttttcaccactgtaacaatttttttaatcatggaCAACCTGAGTATGCTTTATAGACACCACTTACAGACCCCACAGACAGTATACAGGTTTGAGACAAAGCCCAAGGTGGAGGGTGTCATTATCTGCTGTCATAATCATCGTTTTTTCAGTATTAAAGAATTAGGAAAATAAAACCTGCACACATCATTGAGGTTGTCACAGTTGCCAAGTACTAGTTAAAAGCTTccttatatttttctgtttgcGACTGTGTTATGCCATACTGTAAATTTGgcatcaggttttttttttctagctgtACTTCTTTCGAGTGTGGTAATGGAATTCCCACCGATTTAAATCAGCCAGCTCTGATTGTGAATCACTATTTTGACATTTCCTGAGTGACTTGCAGCAACTCAAGAACATTAAGTATTTAGCCCCGCCCTCAGGATGAACTGGCGTCAAGGGTACATGACTCAAATCATTGAGTCAATGATGAGAAATTGACCATATTTAACAGTTGGGTCAACctccaaccttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379971 False 413 lncRNA 0.35 1 15302318 15302730
XM_026925820.2 True 2612 mRNA 0.42 2 15299061 15303288

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-68b7.5 LOC108280921 coding upstream 1525 15292775 ~ 15297536 (+)
si:dkeyp-68b7.12 arhgap30 coding upstream 6437 15281241 ~ 15292624 (+)
nectin4b LOC108280452 coding upstream 30442 15255190 ~ 15268619 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding upstream 51058 15242029 ~ 15248003 (+)
ncstn ncstn coding upstream 58533 15231547 ~ 15240528 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding downstream 10577 15313865 ~ 15320984 (+)
tpgs1 tpgs1 coding downstream 18173 15321461 ~ 15326058 (+)
sf3a2 sf3a2 coding downstream 29414 15332702 ~ 15337978 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding downstream 109450 15412738 ~ 15460090 (+)
pias4b LOC108280250 coding downstream 200345 15503633 ~ 15511913 (+)
G320797 LOC108280451 non-coding upstream 72989 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 627392 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 738448 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 840052 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 842604 14455383 ~ 14456457 (+)
G320843 NA non-coding downstream 7316 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 37278 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 158566 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 240609 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 267406 15570694 ~ 15571089 (+)
fcer1gl LOC100304589 other upstream 45506 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 197600 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 232690 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 470283 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 632553 14637781 ~ 14666508 (+)
LOC113533167 NA other downstream 263266 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 322514 15625802 ~ 15682276 (+)
G321088 NA other downstream 565728 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 626659 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 797245 16100533 ~ 16111089 (+)

Expression


Co-expression Network