fcer1gl (LOC100304589)


Basic Information

Item Value
gene id fcer1gl
gene name LOC100304589
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15249515 ~ 15253555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379931
TGTTCAAAGGACTGCTTTCACACAGACTCTTGCAGAAttagcacacgcacacaccgtTCATCTCATCGACCATCGCTCTGGCTTCGGCTCTGATCAGTTGAAACAATGTATGGATCAGGGATATTGATCCTCCTGCTCCTGAATTTTGGAGCTGCTGAGGCTGCAGATGGAGTGTGTTATGTCCTTGATGGGATTTTGGTTGTTTATGGCATCATCCTGACGATCCTCTACTGCAGACTAAGGATGCAGTCTGGAAATAAAGAGACAAATGAAGAGAACCCAGATGGCATCTACCAGGGTTTGAAGCATCGCAATCAGGACACCTACGAGACGCTCCATGTGAAGAAGCAACCTTTGGCATAATTGTTTGATATTTTAATCTTTCTGATTTACAACAACTCTGCCTGTCGAATAAGCATTTCCTTTCTGTCAAATTCCTGTAtatctgttttatgttttgcttactaacatattttatttttaCATTTGTTGGCATTTAAACCTTTCCTTTTACATTATATAACTTACTAAGAGCTGAATGTATATgccttgtactttttttttatattttatataattagaTTATAGGTTAATCACTATATAATTATGATCTAGCAgacataattttataattatgtcAATTATATTCAAAACACAGtgctattaaatattattactttgCTATAAGACCAAAGATGGTGAATGTACAGAAAGAAGCCTTTGAAAAGAGATCAAATCATTgataagaataaataaagtcttggatccaccatgaccctgaccaggagtGGCGATtgatgataaatgaatgaatagtttGAAAACAAGCACAAGAAAGAAGTCAAAAACTAGCCATGCCTCACTCAGGAAGAAGATTGCTATTTGAAGAAGGCAGTGTATAACATCTGGCAGAGTTATAACAGATGTGTCAGGAAGAATAAGGGCTTGGAGGATATACAGAGTCTGAAAGCAGTTATAAAAACAAAGGCTAAGCATACAAGTTACTAAAGAGTATTTATATCACTTTCAGAATGGgtgtcacatttatttttgttatttatgaaTGTCTTCAATGCAAcctaacattaaatgttttcttgat
>XM_026925042.2
TGTTCAAAGGACTGCTTTCACACAGACTCTTGCAGAAttagcacacgcacacaccgtTCATCTCATCGACCATCGCTCTGGCTTCGGCTCTGATCAGTTGAAACAATGTATGGATCAGGGATATTGATCCTCCTGCTCCTGAATTTTGGAGCTGCTGAGGCTGCAGATGGAGTGTGTTATGTCCTTGATGGGATTTTGGTTGTTTATGGCATCATCCTGACGATCCTCTACTGCAGACTAAGGATGCAGTCTGGAAATAAAGAGACAAATGAAGAGAACCCAGATGGCATCTACCAGGGTTTGAAGCATCGCAATCAGGACACCTACGAGACGCTCCATGTGAAGAAGCAACCTTTGGCATAATTGTTTGATATTTTAATCTTTCTGATTTACAACAACTCTGCCTGTCGAATAAGCATTTCCTTTCTGTCAAATTCCTGTAtatctgttttatgttttgcttactaacatattttatttttacatttggttAACCAGCTTGCTTTTCACCATTTGTTGGCATTTAAACCTTTCCTTTTACATTATATAACTTACTAAGAGCTGAATGTATATgccttgtactttttttttatattttatataattagaTTATAGGTTAATCACTATATAATTATGATCTAGCAgacataattttataattatgtcAATTATATTCAAAACACAGtgctattaaatattattactttgCTATAAGACCAAAGATGGTGAATGTACAGAAAGAAGCCTTTGAAAAGAGATCAAATCATTgataagaataaataaagtcttggatccaccatgaccctgaccaggagtGGCGATtgatgataaatgaatgaatagtttGAAAACAAGCACAAGAAAGAAGTCAAAAACTAGCCATGCCTCACTCAGGAAGAAGATTGCTATTTGAAGAAGGCAGTGTATAACATCTGGCAGAGTTATAACAGATGTGTCAGGAAGAATAAGGGCTTGGAGGATATACAGAGTCTGAAAGCAGTTATAAAAACAAAGGCTAAGCATACAAGTTACTAAAGAGTATTTATATCACTTTCAGAATGGgtgtcacatttatttttgttatttatgaaTGTCTTCAATGCAAcctaacattaaatgttttcttgatt

Function

NR:

description
PREDICTED: high affinity immunoglobulin epsilon receptor subunit gamma-like

GO: NA

KEGG:

id description
K07983 FCER1G; high affinity immunoglobulin epsilon receptor subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
TU379931 False 1102 lncRNA 0.35 6 15249515 15253554
XM_026925042.2 True 1130 mRNA 0.36 5 15249515 15253555

Neighbor

gene id symbol gene type direction distance location
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding upstream 1512 15242029 ~ 15248003 (+)
ncstn ncstn coding upstream 8987 15231547 ~ 15240528 (+)
LOC113533638 apcdd1,LOC108280926 coding upstream 58276 15175775 ~ 15191239 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding upstream 109663 15118493 ~ 15139852 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 444709 14778222 ~ 14804806 (+)
nectin4b LOC108280452 coding downstream 1635 15255190 ~ 15268619 (+)
si:dkeyp-68b7.12 arhgap30 coding downstream 27686 15281241 ~ 15292624 (+)
si:dkeyp-68b7.5 LOC108280921 coding downstream 39220 15292775 ~ 15297536 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding downstream 60310 15313865 ~ 15320984 (+)
tpgs1 tpgs1 coding downstream 67906 15321461 ~ 15326058 (+)
G320797 LOC108280451 non-coding upstream 23443 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 577846 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 688902 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 790506 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 793058 14455383 ~ 14456457 (+)
G320843 NA non-coding downstream 57049 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 87011 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 208299 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 290342 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 317139 15570694 ~ 15571089 (+)
LOC113533365 LOC108280254 other upstream 148054 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 183144 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 420737 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 583007 14637781 ~ 14666508 (+)
rab31 rab31 other upstream 782762 14386238 ~ 14466753 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 45506 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 312999 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 372247 15625802 ~ 15682276 (+)
G321088 NA other downstream 615461 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 676392 15929947 ~ 15936773 (+)

Expression


Co-expression Network