LOC113533167


Basic Information

Item Value
gene id LOC113533167
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15566554 ~ 15570478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380088
TTAGGCGCCATATTGCTTCCGCTAAAGCGTATTTTTAAGCCGTCAGGTTGGGAAGACAGACTCTCCAGAAAATGCTCGCTAAATTAATAGGACAGAAATATCTCTCCATTGGAAAGGCGTGGGTTCCCACGCTGGCTGTATGGGGAGGCGTTGGAGGCATTGCAGTCGTCCACTTTACAGACTGGCGACTGATCCTGGACTATGTGCCCTACATCAACGGCAAGTTCAAGAAGGACTAGATGCGTGCGAACTTCTGGGTCCAAAGTTCTGGTGCTGAGTGAAAGATCGGGTCAGACATCCCAACTCGGAGATAACTGAAGATTCATGGCCACAGCTCTGCTGCATGCAATGTGCTCATCACTGTCTTTCTTCTGTTTAACAGTGCTAATGGATATATGATTTCTTTTTTGGGACAGTCCGTCTTCctgtttcttttgttgtttcGAATGACTTtggttgtaaatgtaaaataaagcgATTCTTGTGATACAAATATGAATTCTGACCCAACACAAATCACTACACCAAACAACTTAGGACATAATGGATTGTTTTTCTTCCTACAGAGTCATTTCCCTGAATAAACAATCCGTGgttattatttacaattatggA
>XM_026925093.2
GCCATATTGCTTCCGCTAAAGCGTATTTTTAAGCCGTCAGGTTGGGAAGACAGACTCTCCAGAAAATGCTCGCTAAATTAATAGGACAGAAATATCTCTCCATTGGAAAGGCGTGGGTTCCCACGCTGGCTGTATGGGGAGGCGTTGGAGGCATTGCAGTCGTCCACTTTACAGACTGGCGACTGATCCTGGACTATGTGCCCTACATCAACGGCAAGTTCAAGAAGGACTAGATGCGTGCGAACTTCTGGGTCCAAAGTTCTGGTGCTGAGTGAAAGATCGGGTCAGACATCCCAACTCGGAGATAACTGAAGATTCATGGCCACAGCTCTGCTGCATGCAATGTGCTCATCACTGTCTTTCTTCTGTTTAACAGTGCTAATGGATATATGATTTCTTTTTTGGGACAGTCCGTCTTCctgtttcttttgttgtttcGAATGACTTtggttgtaaatgtaaaataaagcgATTCTTGTGATACAAATATGAATTCTGACCCAACACAAATCACTACACCAAACAACTTAGGACATAATGGATTGTTTTTCTTCCTACAGAGTCATTTCCCTGAATAAACAATCCGTGgttattatttacaattatggAACAAa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03050 Proteasome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU380088 True 615 lncRNA 0.43 3 15566554 15570473
XM_026925093.2 False 614 mRNA 0.43 3 15566560 15570478

Neighbor

gene id symbol gene type direction distance location
tcf3a LOC100304646 coding upstream 2769 15534922 ~ 15563785 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 45333 15514412 ~ 15521221 (+)
pias4b LOC108280250 coding upstream 54641 15503633 ~ 15511913 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding upstream 106464 15412738 ~ 15460090 (+)
sf3a2 sf3a2 coding upstream 228576 15332702 ~ 15337978 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding downstream 1486 15571964 ~ 15578078 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding downstream 9543 15580021 ~ 15586283 (+)
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding downstream 80143 15650621 ~ 15658676 (+)
armc6 armc6,LOC107696408,LOC107671809 coding downstream 89498 15659976 ~ 15666070 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 227713 15798191 ~ 15842389 (+)
G320949 NA non-coding upstream 20462 15543897 ~ 15546092 (+)
G320935 NA non-coding upstream 103322 15461854 ~ 15463232 (+)
G320848 NA non-coding upstream 225347 15340566 ~ 15341207 (+)
G320843 NA non-coding upstream 255745 15310604 ~ 15310809 (+)
G320797 LOC108280451 non-coding upstream 340482 15223871 ~ 15226072 (+)
G320977 NA non-coding downstream 216 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 25546 15596024 ~ 15596226 (+)
G320988 NA non-coding downstream 42716 15613194 ~ 15613541 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding downstream 45519 15615997 ~ 15616218 (+)
G320992 NA non-coding downstream 46433 15616911 ~ 15617123 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 263266 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 312999 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 465093 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 500183 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 737776 14827242 ~ 14828778 (+)
slc25a42 slc25a42,LOC107696381 other downstream 55324 15625802 ~ 15682276 (+)
G321088 NA other downstream 298538 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 359469 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 530055 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 541557 16112035 ~ 16120033 (+)

Expression


Co-expression Network