LOC113533481 (LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990)


Basic Information

Item Value
gene id LOC113533481
gene name LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15798191 ~ 15842389 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297740.1
GTGTGAGGTACTCAGTGATTAAACCCCGTCCTGAGTGTAGGAGTGGAGAACCGGGAGTCTACACTGACTCATCCACAGAGCTCGCCAACGGGACTGCTATGTTCAGTGCATACTGCTACAGAGAAACACAGCATTCCTCTACTGAGCCACCTGTCCCCAGCCATCAAACTGGACCAGTCAAGTGGATCTGGACACTGAGCCCATTATGGTCAGCGAATTCGTCCCTGATGATTATATTATGGCACGTCTCTGTGTAGAGGATGGCTCCCTAGACTGGAGTAACCAGGAAGATTCCCCCCAAAATAGCTGGCAGGACATCTCTACCCCACTACCTGACATCACCACTGAGAGGCCCAGAGAGGAAAATAAGGACAATGAAGTTACAACAGTTCCCTTGCCAACACCAACCACAGCTCAGAAGAAAGACTCCTTCAGAAATGCCATGAGCTCCTGGTGGAAACCCTGGAACTACCTGACAGGAAATGATGAAGAGGTGAAGGACACCACTCCGAGTCCTCTTACCACAGTGCCGGGTGTGATTAGCACTATGGTCCTCGAAGTGTCTTCAAGCCCAAAGTCTACCGCTTCTCCAGCATCAGGTCCAGTGTCATGGTGGTCACAGTCATGGTTCAACAAATTTTCCTCAACTGTAGATAAAACGACTGTATCCCCTCAGCTTGAGAACACAGAAGCCTCATCGGCAGTCCCAGTCGAGACCACCAGAGAAGACCTGGACCAAAGCATGACCACAGCCACAGGAGATTGGGCAGTGGTGACCGAGGTTCTCCAGCTTGAAAGTATGACACCTGACTTGGAGAAGGAGGTTGTGCCCTCTGTAATTTCACTCAAGCATGACGAAGAAGACAAGGAGAAAGTGATTGGGCTACCGCAAGAGGAATTTGGAgaggacaggaggacagaggCAGAGGGTAGCTCCTGGGGGGATGTGGACCTATCAGAAAGCACCACCAAAACCCTAACAACAGGGCAAGTCTTAACTAGTATGGCTCCTAGCATCAAAGGGACTGTAGTTACAACTACACAGCAAGTGGAAGAGATAACTGCCGCAGAGGCTCGAGGAGAGATCCAGTATGAACCCAGGACCAGAGCAAGCCAACCTCACCAAAAAATAACCACCACGTTTGTCTCAACAACTTTGGCTGGTTCAGAAAGGGAAGCAGGAGCCCAGACCACCTTGATTCCTGATCTTCCCACTTCGTCTTCTCAAAGCCTGACAGAAAGAGGAGTCATCTCTCCCACGGCTTCCGATGAGCACCATCTGTCAATCTTTGGTACCCTGTTGCCTGGCAACCCAGAGAGTGGCCTTGGCAACTCTGATTCCAGCAGAAACAATGGATCTGAAGCTATGGACAGGTGCAGTTGCTTGCATGGCGGGACGTGCCTCCCCCATGACGAGGGCTTCCAGTGTTTCTGCCCACAGGGATACACAGGAGAGAGCTGTGAAATCGATGTAGATGACTGTCTGTCCAACCCATGTGAGAACGGAGGAACCTGCATCGATAAGGTGGACTCCTTCATCTGCCTGTGTTTGCCCAGCTACAGTGGAGACATGTGTGAGAAAGACACTGAAGGCTGTGACCATGGCTGGAAGAAGTTCCACGGTCACTGCTACAAACTTTTCACCCGCCGGCACACCTGGGAGGACGCAGAGAAGGACTGCAGAGAGCTCAGCGGCCATCTGACCAGCGTCACCTCCAGCATGGAGCAGGACTTCCTCAACGGCCTGGGCCATGATAATGTGTGGATTGGGCTGAACGACAGAACAGTGGAGGAAGATTTCCAGTGGACTGACAACATGGACCTGGTATATGAGAACTGGCGCGAGAACCAGCCGGATAATTTCTTTGCAGGTGGAGAAGATTGTGTAGTGATGATCTCTCGAGAGGATGGCAAGTGGAACGATGTGCCTTGTAACTACAACCTGCCCTACATCTGCAAGAAGGGCACAGTGATGTGCGGCACTCCTCCTGCTGTGAGAAACACGTATCTTGTGGGTCGGAGGCGGGCACACTACGACATCCACTCAGTGGTGCGTTACCAGTGTACTGACGGCTTCTTCCAGAGACACGTCCCGACGGTGCGCTGCCGACCCGATGGCACCTGGGAGAGGCCCAGGATCGTCTGCACCAAGTCACGGAGGTCTCACCGTTACCGCCGGCAACATCATAGATATCACCATGAGCACCGGCGACACCGCAGACACGGCTCTGGCCACAGGGGGCGGGACTAGAGCCACCACTCGTCGCCTACAGGTCTCTGTGTGATATCACTTCCTTTAATGGAAGTGAATGGGCCTTCAAGGACAGATATGGTCAtaccttttttccccttactctttctcttttcctagagtctttctcttctttcaaaGAATGTGTTTCGACTCATCCTTTCTCTGTACATGTTTTCTTCGCTTTGGATTTAGTTACAATGTTCATTTCCATCTCGCTAAAAAAGGAAACTGACTCTTCTAGCTTCGCCGCTAATATACAACCTAGTCGTGGGTGTTTACTAAAATTCTTGGATATGATGATTGCAGGTCATGTTCTCCTAAGTATGTCATTAACCTGTGTGTTTGAAGCAGGTTTATGCCTTCATAGGACGTTTGTATTAATTATTGTTGTAGGAGCAGAATGTTCTCATAGGTCTTGCTGAGTATCTGTTTGATTAGAGTTCTGTATATCTACTTTGTAGTGCaataataaattctttaatCAATGTCACCCAAACCTCCCAGAAATGACACGTTGTCATATTACTCTATTGGCGATGCCTGTATATATTACAGTGAACAATAATCAGTCCTTGTTATGgcataataaatgattttttttattcataattttt

Function

GO: NA

KEGG:

id description
K06794 NCAN, CSPG3; neurocan core protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297740.1 True 2868 mRNA 0.49 10 15798191 15842389

Neighbor

gene id symbol gene type direction distance location
armc6 armc6,LOC107696408,LOC107671809 coding upstream 132121 15659976 ~ 15666070 (+)
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding upstream 139515 15650621 ~ 15658676 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 211908 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 220113 15571964 ~ 15578078 (+)
tcf3a LOC100304646 coding upstream 234406 15534922 ~ 15563785 (+)
sbno2a sbno2 coding downstream 20758 15863147 ~ 15890456 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 51612 15894001 ~ 15923289 (+)
pip5k1cb LOC108280566,LOC108427169 coding downstream 96506 15938895 ~ 15984585 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding downstream 149831 15992220 ~ 15999440 (+)
cers4b LOC108280569,LOC108427174 coding downstream 185981 16028370 ~ 16038180 (+)
LOC117600003 NA non-coding upstream 93607 15683071 ~ 15704584 (+)
G320992 NA non-coding upstream 181068 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 181973 15615997 ~ 15616218 (+)
G320988 NA non-coding upstream 184650 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 201965 15596024 ~ 15596226 (+)
G321203 NA non-coding downstream 180097 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 199405 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 203757 16046146 ~ 16046482 (+)
G321220 NA non-coding downstream 206705 16049094 ~ 16049308 (+)
G321221 NA non-coding downstream 207331 16049720 ~ 16050849 (+)
slc25a42 slc25a42,LOC107696381 other upstream 115915 15625802 ~ 15682276 (+)
LOC113533167 NA other upstream 227713 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 494903 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 544636 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 696730 15082238 ~ 15101461 (+)
G321088 NA other downstream 26627 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 87558 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 258144 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 269646 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 288946 16131335 ~ 16132364 (+)

Expression


Co-expression Network