G321217


Basic Information

Item Value
gene id G321217
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16046146 ~ 16046482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380392
CTTAATGTTCCTTGTTTTCTGTTCAGGcccattttaatattaaataatattaaataatattaaaatgggCCTGAATAGAAAACAAGAGTTAATCATGTCATACAGGATCagaaatatgtaagaaataaaacacaacaggtcatgctgttataagaaaataaacaatatcGGGTGGTATAACAActgatgctgattattttcttataacagcacatcctgaaatgttattcttcttatgccacagcaatttgccagtgattacaattaatgaacatgtcatactttttaacagtttatacctacatttaatgttgtggaacatctgagagacaagata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380392 True 337 lncRNA 0.30 1 16046146 16046482

Neighbor

gene id symbol gene type direction distance location
uba52 uba52,LOC100135798,LOC100194659 coding upstream 4408 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 7966 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 46706 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 61561 15938895 ~ 15984585 (+)
arhgap45a LOC108280537,LOC108427168 coding upstream 122857 15894001 ~ 15923289 (+)
cplx4c cplx4c,LOC108280361 coding downstream 115972 16162454 ~ 16167346 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding downstream 128088 16174570 ~ 16180499 (+)
trnag-gcc_18 NA coding downstream 137590 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 139015 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 141507 16187989 ~ 16193122 (+)
G321214 NA non-coding upstream 2408 16041794 ~ 16043738 (+)
G321203 NA non-coding upstream 23078 16022486 ~ 16023068 (+)
LOC117600003 NA non-coding upstream 341562 15683071 ~ 15704584 (+)
G320992 NA non-coding upstream 429023 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 429928 15615997 ~ 15616218 (+)
G321220 NA non-coding downstream 2612 16049094 ~ 16049308 (+)
G321221 NA non-coding downstream 3238 16049720 ~ 16050849 (+)
G321223 NA non-coding downstream 5302 16051784 ~ 16052266 (+)
G321226 NA non-coding downstream 9728 16056210 ~ 16056430 (+)
G321235 NA non-coding downstream 21545 16068027 ~ 16068547 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 109373 15929947 ~ 15936773 (+)
G321088 NA other upstream 175151 15869016 ~ 15870995 (+)
slc25a42 slc25a42,LOC107696381 other upstream 363870 15625802 ~ 15682276 (+)
LOC113533167 NA other upstream 475668 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 742858 15299061 ~ 15303288 (+)
jund jund,LOC108280549 other downstream 54051 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 65553 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 84853 16131335 ~ 16132364 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 696323 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 710149 16756631 ~ 16788968 (+)

Expression


Co-expression Network