sbno2a (sbno2)


Basic Information

Item Value
gene id sbno2a
gene name sbno2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15863147 ~ 15890456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925305.2
TTCCCCCCTCTCTTCCTAAAACTAAGATGGCGCCGCTGACCAGGAAGTGAGATAAACAACCGTGCCGAAAGAAATATGGATTAAATTCAGAATTTGACACGGTCCAAAACAGTTTTGAGGGACTGTCGGTCGTCGAGGTGGGGTGAAACCGCGGGGAAATGAGGTTTAATTGTATCCGAGATGGCTGGAATATGATGAAACGCATTGCTCCATTGGGCGCGCTGTTCGGCTCAGTCCCTGTGGCGCTACGTAGAACCTGATGCCCATTCTCGCAACATCTGTCGTCATGGACGCGGAGGACTTCCTGCACCCAGAGGACCCTCAGCTGGAGAGCCCCAAATACAGTGTGCCCAGTCCTCAACTCCCCAATGCCATCGAGAGTCAGCTGTTTTCCTCTAACCCGTGGCAATTTTCCCAGCCGCCTCAGTACAACCAGTACAGCTATCCTATGCAACAATCTGGGAGGCAGTTCCAGGTCAACCCCTCATCTGTGGATGAGTTCAGCTCATTCCCTGACGTGGATTTCTCTGACCTCACATCAGGCAGGAATGACCTTGCACCAGATCTGTCATGTATCGATGACCTGTCCAACCCGTCTCTGTTCTCCTCTAcccctgactctctgtctgaATATGACCCTGCTAGCTTTGGCATCGATACCATGTCCCACATACCCAGCGAGGGCTCCGCCTCAACACCAGCATTCTGGGACACACCTGGAAACAGCCAGAGACAGTTGACCAGGTTTCCAGAAGAAATCAATGCCATCTTTAACAACCAACCATTAGCAGGATATAAGCTCCCTGAAATTGGTCAGACTCCaccagaggaggaagaggaggcagATGAGGAAGAGACGGAAGAACTCGGTCACATAGACACCTACGCTGAATACAAGCCATCCAAATCTACTATAGGAATTTCTCATCCAGACATTGTGGTAGAGACCAGCACTCTCTCCAGTGTCCCTCCCCCAGACATCACCTACACGCTCTCCATCCCAGACAACACTATCCGGACCGGTTTGCTCTCTGCCCTGCAGCTCGAAGCCATCATCTATGCCTGCCAGCAACACGAGGTTATCCTGCAGAATGACCAGAGGGCAGGTTTTCTGATTGGAGACGGAGCCGGTGTGGGGAAGGGTCGCACTGTAGCTGGCATCATACTGGAGAACTATTTAAAAGGAAGAAAGCGAGCCCTGTGgttCAGTGTTTCTAATGATCTCAAGTACGACGCAGAAAGAGACCTCAAGGACATAGACGCCCCGAATATTCCTGTGTTTGCTTTAAACAAGATTAAGTATGGAGACACAGCTACCTCAGAGGGCGTCCTGTTTGCCACATACTCGGCGCTGATTGGGGAGAGTCAGGCAGGGGGACAGCACCGCACCCGACTCAAACAGATATTGGACTGGTGTAAACCTGGCTTTGACGGAGTCATTGTGTTTGATGAATGTCATAAAGCCAAAAATGCGACATCCACGAAGATGGGCAAAGCTGTCCTGGACCTGCAGAACAAGCTGCCCCGGGCCAGGGTGGTGTATGCTAGTGCCACAGGTGCCTCTGAGCCAAAGAACATGATCTATATGAGCCGGTTGGGGATTTGGGGAGAGGGGACACCCTTCAGGACATTTGAGGACTTCCTACATGCCATTGAGAAGAGGGGTGTCGGCGCCATGGAGATAGTTGCCATGGATATGAAAGTCAGTGGCATGTACATAGCCCGGCAGCTCAGCTTTTCTGGGGTGTCATTTCGGATCGAGGAAATCGCACTGGATGAAGAATTTAAGCTGGTCTACAACAAGGCAGCCCGACTGTGGGCTGAAGCGCTGGAAGTGTTCACCAGGGCAGCAGATATGCTGGGACTGGTCTCTCGTAAGTCCCTCTGGGGCCAGTTTTGGTCCTCCCACCAGCGTTTCTTTAAATACCTCTGCATCGCCGCCAAAGTGCGCCGCTTGGTGGAGCTCGCTAAGGCTGAGATGAATCAGGGCAAGagcattGTGATTGGGTTGCAGTCGACCGGTGAGGCCCGTACTCGTGAGGTTCTGGATGAGAATGATGGACACCTAGACCGATTCGTCTCTGCAGCTGAGGGTGTGTTCCAGTCCTTGGTTCAGAAGCACTTTCCATTAGAGAAACCGAAGAGAGAAAAGACTGCTGGAAATAAACGAAAACGAAAACCAAGAGGTCGGCCACCCAAATGTCAAAAACCCTGTGTAGAGGTTGGTGAAGTTATTAAGATCAGCGATGGCTCAGATTCAGACTCTGAGGACATGGATAGTGATTCAAACTCGTCCCCTGAGTCACTGCAAGACAACGATGACGTCATCTTTGTTAACCACATCAATGGACCTACTGCAAAACTGGAGGAGTTGAAGCAGGGGCTGCTGGCTAAGATAGCAGAGCTGGGAAAGGAGCTTCCTCTTAACACACTGGATGAGCTGATTGATCAGTTCGGAGGGCCAGAGAAAGTGTCTGAGaTGACAGGTCGTAAGGGCCGAGTTGTGCGGAGGCCAGATGGCAGGGTGCAGTATGAATCACGTGCTGAACAAGGATTCACCATCGACCATGTGAACATCAAAGAGAAGTTACGATTTATGGATGGCGAAAAGCTGGTGGCGATCATCTCAGAGGCTGCAAGTTCAGGGATTTCTCTACAGGCAGATAAACGTGTGCAGAATAAAAGGAGAAGGGTGCACATGACGCTGGAGCTGCCGTGGAGTGCTGACCGTGCCATCCAGCAATTCGGTCGCACTCATCGCTCTAACCAGGTAACAGCTCCAGAGTACATCTTCCTGATCTCAGAGTTAGCAGGAGAGAGACGCTTTGCTTCCATCGTGGCCAAGCGCCTGGAGAGTTTGGGGGCACTGACACATGGTGATAGACGAGCCACTGAGTCCAGAGATTTGAGCAAAtacaattttgaaaataaaTATGGAACAAAAGCTTTGGATAAGATCACTAAAGCCATCTTGGGATACATTGAAAACAAAGTTCCACCACCAAAAGGCTATCTAGGGGGTGATGAAAGATTCTTTGCAGatatGAAGAAAGGGATGATTGATGTGggcattttctgtaaggagccACGCTTTGGCCTCAACACAGAAAAAGACTGCACCATCACTAAATTCCTGAATCGGATTCTAGGCCTGGAGGTGCACCAGCAGAACTTTCTCTTCCAGTACTTCACCAACAACTTTGAATACCTGATTGACAAGGACAAAAAGGAAGGCAAATATGACATGGGTATACTTGATCTGGCTCCAGGTAATGATGAGATCCAtgaagagaaacaggaagtattCCTGACTCCTGGGAACCCCCAAGAAGGCCAGGTCACCCTCTATAAGATCAGTGTGGATCGGGGAATGCCATGGGTCGAGGCCTGCAGCAAagcaaacacactgactggGGAATATGAGGGCTTCTACCTTTCCCACAAGCTGCGAGGGAGCCAGCCGTGTGTGTTGCTGGCAGAGCAAGGCCGAGGTCATAACCTGATAGTCTATAAGCCTAACATCGGCAGGCAGGCCCACCCTGAGAACCTGGAGAATCTGCTGCAGCGGTACCGCAAGGTGACACAAGACCAGGCCAAAGATTGCTGGGAGAATCAGTTCGTCTTCTCGTTCCAGAAGTGCAGCCATGCTAACTGgaAAGGTAAGTGTAAGCAGGTGGAGCAGGGTCAGGAGTGCTGGCTGGGCATGCGTCTGCGACAGTACCACATGCTGTGTGGAGCTTTGCTGAGAGTGTGGAAGCGAGTCGCAGATGTTGTCTCTGATATCACCAATTCCAGCATCCTGCAGATTGTGCGCCTCAAAACCAAACAGAACAGCAAGCAAGTCGGTATAAAGATACCAGAGAACTGTGTGGAGCGTGTGCGCAGCGAGCTCTCTCAGATGGACTCAGATGTGAAGCGAGCTCGGCAGCAGAAGGAGCAGCGTGCGCAGGAGCAGCGTGCGCAGGAGCAGCGTGCGCAGGAGCAGCGTGCGCAGGAACAGCGTGCACAGGAACAGCGCATCCGCCAGGAGTTTCTCAGGCTTGAGCAGCAGAAACTCTACAGCCGCAAGGCCTTCAGTCACGCTGCTATGCATCTACCAAGCCCCCCACCGTACCCAGGCTCACGGCCTGGCCGGGCTGCCCTGCCCACGAGCCAGGCTGTGGACGAAGTGCTGGACCTCACACTCAGCCCCTGCTCCTCCCCTGAGCCCAAACCGACTCATGCAAATGGAGCGCTGGGCCTGAATGGAGTAGTGGGTATGAACGGTGTCTTTGGCATGCGGAGAGGAGCAGGGGAAGGAGGGTTGAAGATCCCTGAGACATTTCACCTGGAAGACCTGATCTCTCAGGAGCGGCAGAGGGAGCATAACATAGCGCAAACCATCCACACACAGACGCAGCACACGGCGCTGAGCGtgctgcagcaaaacccaggaCATTTGCTCACGCCCCAGCAGAACCCCGGTCAATTCAACGCACAGCTGCTGAGACACAATGGGAGCAAACCAGACATTAACACGCTAACCAACTACAGCATACATGCGCAGCAGTTTCAACAGCATGTAAACTCCATATCACAGCCACCTCGCTTGCTTCAACCATCTCCTATACAGCAGGATGGTCATCAACActcactgatgcacacacacacgcacagtttgcacacacatttacggGAAAACCAAATGCCAGTCAGTGAACCTGCTCCGCTTTCATTAAAACTGGGTCAGCAGTCTCAGCAGGGGTCACTCAGCAGTCAGTCTGTCACAGAAAATTCTGCATCTCCACAGGACGACTTCAGCTTCAACCTTGACCTGCTCGGTCATCCTCCATACTCGTTAACCCATCAAGCCCCTCCCTCACCTTCATTTTCTTGTTCCTCCCCTGGGACGTCATCGCTCTTCTCTTCAGACCCCCAGTCTTCTTCACTCTCTGACTCCATCTCCCCTTCTTCTCTGTTTGCGCCTTCGTCCGAGCGACTGCCTCTTCCATTACCCAACGGCCACTCCAGCATGGATGCCCAGGATGCCCACGATGCCCACAAGGCCCTCGACCGAATGGCTCGCGGAGGTTCTGCAGACCGCCGCCACTCTGTCATTCAGTTCAATTCTCTAGACTGGGACACCACCTAGTGGCCACTAACGCCTGTGAGCTCATATCACCACTGTACATGCACATGGCAGTACTGTCAGTTTCCTTTACTgtgatctcagcatgtctggctgAGGTATTTTGTAGTAGGTGTTGttctttcttcagtttgtccccgCCCCCACCCCAGATCATTCATCCACTggctgtagtgtttttttttttttgcttttatcaACAGTGTTTCTTCCTTCGCTGAAATTAAGGTCCATTAATTAGGGATGTTTGACATTGGTAGGTTTACGGCTTGTGGTTTAGGTGAGGTTGTCTAGCATGATGATAACATCGGAGTGGTTTTAATCAACATGCCTCACATGGTCATTTTCCCAgttcaaaaaagaaaagcatttttaaagcgGTACACTAGTTCAGATTTTTATGAAAGTCATGTCTGAATATGGTTTCATCATCTCAAAtctgttgcacagcattaactAACATATTTATCACTATAGCTCCTGTTGCTGCTTCTGAATGATGCAGATTTCATCAAGTTTTTCCATATATGACGATtcttctagtttttttttttttgttaccgACCAAATGCAAGTGTCATCACTGAAATGCTGATCAGTTTGGATTATTCACAACAACTGCAGACATCCTGTAAAACCTTCATCAGTGCACCTTTAATACTTTTGAAACATCAACTACatggtgtatatttatttatatggtcCTTTGGGCTTTTGTCACACCTACTCCTGCTTCCTGTTGAAAATTGAATCAGACCTGGAAGAAAATGCCTTTAGCTCAGTCAGTGCCTTTGTATCATTAAGATGCAGTCaatgatattgtgtgtgtatttgtgtgtgcgtgcatgtgtgtatgttctacaaaagcaaattaaatgcatattatttattattgcgaTCATCATCTTGCTCCCTCTACGAAGATGTCTGCTCTACTTCACCAGAGGGGCTCATTGACTTAGAAATTTGTAATACTGCTGTTTTACATATTGACCccgtgaattttttttcccataattcCATGGGCCTGAGTAGAGGGATGGAATGGCTGGAAATATCTAGGGTATGATAATAAAGCTAACAAACATCATCCCTAGGTTAATGAAGTACTCTATTTGCTTTACTGCTTGTTTTGTACTTTCTCAGGTATAGTGTAAACTTATTACTGTCCAGACcaattattatttaactaaaaaaaCTAAAGGACCTTTGGGCGTTGGAcaccaaattattatttattaggcAACTCAGTTATCttaagagcttttttttttttttttccttttcctgaaccaattacattattaaatactttCGACAGTTAAACTACTGGACCTCATGCTAACCTCAGTCTCCTTCCTGAGGGAGCAAAACATTTAGCAATAAAGATAAATTTGCCCCTTGaacaagttaaaaaaagaaaagaaaaaaaaaaagagcctgaAGCTTGATTAGGATTCTTGTTAGGCTCTCATttccttttaatatttttcagatGTATCAGAAGactattatatttaaaaaaaaaaaaaaaaaggaaaagattaCTAAGGATACGTTTCTTATGAGGTCAAGATATTCTTGTA

Function

symbol description
sbno2 Predicted to enable chromatin DNA binding activity and histone binding activity. Involved in several processes, including cellular response to interleukin-6; macrophage activation involved in immune response; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: protein strawberry notch homolog 2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048854 brain morphogenesis biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925305.2 True 6714 mRNA 0.48 32 15863147 15890456

Neighbor

gene id symbol gene type direction distance location
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding upstream 20758 15798191 ~ 15842389 (+)
armc6 armc6,LOC107696408,LOC107671809 coding upstream 197077 15659976 ~ 15666070 (+)
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding upstream 204471 15650621 ~ 15658676 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 276864 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 285069 15571964 ~ 15578078 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 3545 15894001 ~ 15923289 (+)
pip5k1cb LOC108280566,LOC108427169 coding downstream 48439 15938895 ~ 15984585 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding downstream 101764 15992220 ~ 15999440 (+)
cers4b LOC108280569,LOC108427174 coding downstream 137914 16028370 ~ 16038180 (+)
uba52 uba52,LOC100135798,LOC100194659 coding downstream 149379 16039835 ~ 16041738 (+)
LOC117600003 NA non-coding upstream 158563 15683071 ~ 15704584 (+)
G320992 NA non-coding upstream 246024 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 246929 15615997 ~ 15616218 (+)
G320988 NA non-coding upstream 249606 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 266921 15596024 ~ 15596226 (+)
G321203 NA non-coding downstream 132030 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 151338 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 155690 16046146 ~ 16046482 (+)
G321220 NA non-coding downstream 158638 16049094 ~ 16049308 (+)
G321221 NA non-coding downstream 159264 16049720 ~ 16050849 (+)
slc25a42 slc25a42,LOC107696381 other upstream 180871 15625802 ~ 15682276 (+)
LOC113533167 NA other upstream 292669 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 559859 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 609592 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 761686 15082238 ~ 15101461 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 39491 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 210077 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 221579 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 240879 16131335 ~ 16132364 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 852349 16742805 ~ 16748340 (+)

Expression


Co-expression Network