chico (chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496)


Basic Information

Item Value
gene id chico
gene name chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14602769 ~ 14628849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314782.1
TTTGGGCGGAGTGGGCGGAGTCAGACGCAGAGGCACTTCCGCACACTGTAATCTAATCCGTTTGACATCTAAAAATGGGCCTTCAGAGCGCCGCGTCCATCCCGCATCTCCCAGTTCCTGCCCGGAGACGCGGATAAAGCCCAGGAGCTTTAAACCCGTGGATCATCAGCTTTTATTCTGGATCTGCGGTGTGAGCAGTTTTGCagggtttttgttgtttgtttgtttgtttgtttgggtttttttgtgcatCCGCAGGCTGTTTGTGTATAATAATTCACCTGGCAGCTGGATTATCCGCAAAAACATCCCACATCGCCATCCGGATTGCTGCTTTGTCACCTCGCATGCTGTGTGGCTGTGTTTTGCTGTGGGCTCGGTGTGATCCTGCTGCTCTGGACAGGCAGAGCTCTCTTAGCTGAACTTAGTTGTCCAGGCTAGCCGTGTGCTGTGGGCTAGCTAGCAGATTGTGCACGCGCTGACTTCATTTCCAGCACAGTGCCCTTTTCCGGCTCCATTCCAAAGAGATCGGAGGCAAAGCGTCGATATTTTCACCCCTACCCCATAATCACGAAgctaacaacaaacaaacaaaggatTTGGGTTCAGTTTCACGTGCAGAAGAAAGAAACAGCAAGAAAACTGACATGATGTTTCCACAAGCCAGGCACTCGGCCGCGTCTCAATCAGCACAACCGCTAAAGTTCACCACCTCCGACTCCTGCGACCGCATTAAAGACGAGTTCCAGTTTCTCCAAGCACAATATCACAGTCTAAAGCTGGAGTGTGATAAACTGGCCACGGAGAAATCAGAGATGCAGCGTCACTACATCATGTACTACGAGATGTCGTACGGACTCAACATTGAGATGCACAAACAGgctGAGATTGTAAAGAGGCTGAATGCCATCTGCGCTCAGGTGCTGCCCTACCTGTCCCAAGAGcatcAACAGCAGGTCCTGGGAGCCATTGAGAGAGCCAAGCAGGTCACTCCACCAGAGATGAACTCAATCATTCGGCAGCAGCTCCAGGCCCACCAGCTCTCTCAGCTGCAGGGTTTGGCTTTGCCTATGACCCCTCTGCCCCTGGGCTTGACCCCCCCGACCCtgccttcctcctcctcatcctccaatGCTCCaggtctcttctctctctccagcatCTTGGCGTCACACGCTCACCTCGCCAAGGAAGAGAAGAATGCCCGTGATGCTGCTAGCAGCGCCGACACGCACCGCGACGACGATGGAGACAAATCCGACTAAGTCCACTTTAATGCTTCTCTCACTGAGGCgaagagagcacagagagacaaTGAAAAGAGCACAGCATtgttttttcatcttcatttacCTCTCGCATCCTTCTTCTAAAGCCTCTTGCTTTTCTGAATGCATGCCTTAGTTTAAATAAGTCCTTCGTAGTTGCGTTAatatctgactttttttttttaatttgcatttaatttccTGGCCTGCTATTTGCCATCCCTGCTTCCTCCTTTGTGTTTGGGTTTGTCGAGCTCTTATTATTCCACTGTGGGATCCACGGCTTCCTGCAGTCTGCTAGACTTTCTGCTATCATCCTGTATTTCCAGAGCTCCTTCTCATATGAGCTAGTCGTCAGACTAAACAGAGCAGCTTCTGGATTAAGCCGAGGAGATGATCCTCTTTCCAGATGCTCAGACAATCCATCATTTCTTTATTCCCTCTTTGCAGACGTGGCAGAATTGGATATAGTTTGAAAGATCTTATGAAAGCACAATTAGCCAAATCAGCAGTGTCATTGTGTAATAACTGTACAACCCAATTATATCTGCTTAAAACTTTGCATTTCAATGAACATTAAAGATACAGTTTGTGATTAAAAGTGGTTCTAGATCTATAATAATCATAGTTTTAAAGATACCAgattttttcaatattttctttatttcagcttcctgtttgtttttccaccCTGATTTTATTATTCTCTCTTCCTTAAAAGTAATACATAAAGTAcaatgcataaatattcactccCCTTGAACTTTTCAATATTTTGTAGCGTGACAACCTGGacaacatggtggtggtagcaatCATGTTGG
>XM_034314783.1
TTTGGGCGGAGTGGGCGGAGTCAGACGCAGAGGCACTTCCGCACACTGTAATCTAATCCGTTTGACATCTAAAAATGGGCCTTCAGAGCGCCGCGTCCATCCCGCATCTCCCAGTTCCTGCCCGGAGACGCGGATAAAGCCCAGGAGCTTTAAACCCGTGGATCATCAGCTTTTATTCTGGATCTGCGGTGTGAGCAGTTTTGCagggtttttgttgtttgtttgtttgtttgtttgggtttttttgtgcatCCGCAGGCTGTTTGTGTATAATAATTCACCTGGCAGCTGGATTATCCGCAAAAACATCCCACATCGCCATCCGGATTGCTGCTTTGTCACCTCGCATGCTGTGTGGCTGTGTTTTGCTGTGGGCTCGGTGTGATCCTGCTGCTCTGGACAGGCAGAGCTCTCTTAGCTGAACTTAGTTGTCCAGGCTAGCCGTGTGCTGTGGGCTAGCTAGCAGATTGTGCACGCGCTGACTTCATTTCCAGCACAGTGCCCTTTTCCGGCTCCATTCCAAAGAGATCGGAGGCAAAGCGTCGATATTTTCACCCCTACCCCATAATCACGAAgctaacaacaaacaaacaaaggatTTGGGTTCAGTTTCACGTGCAGAAGAAAGAAACAGCAAGAAAACTGACATGATGTTTCCACAAGCCAGGCACTCGGCCGCGTCTCAATCAGCACAACCGCTAAAGTTCACCACCTCCGACTCCTGCGACCGCATTAAAGACGAGTTCCAGTTTCTCCAAGCACAATATCACAGTCTAAAGCTGGAGTGTGATAAACTGGCCACGGAGAAATCAGAGATGCAGCGTCACTACATCATGTACTACGAGATGTCGTACGGACTCAACATTGAGATGCACAAACAGgctGAGATTGTAAAGAGGCTGAATGCCATCTGCGCTCAGGTGCTGCCCTACCTGTCCCAAGAGcatcAACAGCAGGTCCTGGGAGCCATTGAGAGAGCCAAGCAGGTCACTCCACCAGAGATGAACTCAATCATTCGGCAGCTCCAGGCCCACCAGCTCTCTCAGCTGCAGGGTTTGGCTTTGCCTATGACCCCTCTGCCCCTGGGCTTGACCCCCCCGACCCtgccttcctcctcctcatcctccaatGCTCCaggtctcttctctctctccagcatCTTGGCGTCACACGCTCACCTCGCCAAGGAAGAGAAGAATGCCCGTGATGCTGCTAGCAGCGCCGACACGCACCGCGACGACGATGGAGACAAATCCGACTAAGTCCACTTTAATGCTTCTCTCACTGAGGCgaagagagcacagagagacaaTGAAAAGAGCACAGCATtgttttttcatcttcatttacCTCTCGCATCCTTCTTCTAAAGCCTCTTGCTTTTCTGAATGCATGCCTTAGTTTAAATAAGTCCTTCGTAGTTGCGTTAatatctgactttttttttttaatttgcatttaatttccTGGCCTGCTATTTGCCATCCCTGCTTCCTCCTTTGTGTTTGGGTTTGTCGAGCTCTTATTATTCCACTGTGGGATCCACGGCTTCCTGCAGTCTGCTAGACTTTCTGCTATCATCCTGTATTTCCAGAGCTCCTTCTCATATGAGCTAGTCGTCAGACTAAACAGAGCAGCTTCTGGATTAAGCCGAGGAGATGATCCTCTTTCCAGATGCTCAGACAATCCATCATTTCTTTATTCCCTCTTTGCAGACGTGGCAGAATTGGATATAGTTTGAAAGATCTTATGAAAGCACAATTAGCCAAATCAGCAGTGTCATTGTGTAATAACTGTACAACCCAATTATATCTGCTTAAAACTTTGCATTTCAATGAACATTAAAGATACAGTTTGTGATTAAAAGTGGTTCTAGATCTATAATAATCATAGTTTTAAAGATACCAgattttttcaatattttctttatttcagcttcctgtttgtttttccaccCTGATTTTATTATTCTCTCTTCCTTAAAAGTAATACATAAAGTAcaatgcataaatattcactccCCTTGAACTTTTCAATATTTTGTAGCGTGACAACCTGGacaacatggtggtggtagcaatCATGTTGG

Function

symbol description
chico Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).
aes acetyl esterase; TLE family member 5 (amino-terminal enhancer of split)

NR:

description
PREDICTED: amino-terminal enhancer of split-like isoform X1

GO: NA

KEGG:

id description
K24724 AES, TLE5; TLE family member 5 (amino-terminal enhancer of split)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314782.1 True 2092 mRNA 0.47 7 14602769 14628849
XM_034314783.1 False 2089 mRNA 0.47 7 14602769 14628849

Neighbor

gene id symbol gene type direction distance location
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 8448 14550309 ~ 14594321 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding upstream 115386 14481676 ~ 14487383 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 152330 14438363 ~ 14450439 (+)
sirt6 sirt6,LOC107667852 coding upstream 230576 14344594 ~ 14372193 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 587398 14006357 ~ 14015371 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 149373 14778222 ~ 14804806 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 489644 15118493 ~ 15139852 (+)
LOC113533638 apcdd1,LOC108280926 coding downstream 546926 15175775 ~ 15191239 (+)
ncstn ncstn coding downstream 602698 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 613180 15242029 ~ 15248003 (+)
G320371 NA non-coding upstream 42156 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 143760 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 146312 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 148818 14438716 ~ 14453951 (+)
LOC117595736 NA non-coding upstream 176471 14404979 ~ 14426298 (+)
G320797 LOC108280451 non-coding downstream 595022 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 681755 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 711717 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 833005 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 915048 15543897 ~ 15546092 (+)
rab31 rab31 other upstream 136016 14386238 ~ 14466753 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 475757 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 704855 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1448242 13021142 ~ 13154527 (+)
G319170 NA other upstream 1799750 12765055 ~ 12803019 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 8932 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 198393 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 434872 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 453389 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 620666 15249515 ~ 15253555 (+)

Expression


Co-expression Network