prkab2 (prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198)


Basic Information

Item Value
gene id prkab2
gene name prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13299508 ~ 13305437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925889.2
AAAACGCGTTTCAGTACGGCTTCTAGTTTGGACGTCCGGCGTGCCGTAGTTACCGAGTGAACGTCAAGAATGTTTTTGAAGTTGGAGcagaaagtaaagaaataaagaaatcctGGTTTGGCTGTTAGAGGTGAGACTGCGGAGGAGgcgtctctctgtgtgtagctATGGGCAATACGAGTGACCGTGTAGCTGCAGATCGTCATGGACCAAAATCCCATCGTGCAGATGGTGGTGCCCAAAAAGACCATGAACCCAGCAAGATGGTGGACAGCACGGATGATCCTAACATCTTTAACACACACGGACCTGAAGTAAAGGCTCCAGTGGAGAAGGATTTGCCTCCAGATTTAAATGACTTGGCGAAGGCGGGCACACAGGAGCGTCCAACCGTGATCCGCTGGGCAGGAGGAGGGAGAGACGTCTACATCTCCGGCTCCTTCGACAACTGGAGCACCAAGATCCCACTTAATAAAAGCCATAATGACTTTGTTGCAATCCTGGACTTGCCTGAGGGCGAGCATCAGTACAAGTTCTTTGTTGATGGCCAGTGGCTTCATGACCCTTCTAAGccAGTTGTGACCAGTCAGATGGGAACCATCAACAACCTGATCGAGGTGAAGAAATCTGACTTTGAGGTGTTTGATGCGCTGCAGGTGGACTCTCTCGAGTGCTCCGACACCTCTGatctgtccagctctcctccTGGTCCTTACGGACAGGAAGTGTACATGTTCCGACCAGAGGAGCGCTTCAAGGCCCCGCCCATCCTTCCTCCTCACCTCCTCCAAGTCATCCTCAATAAAGACACAAACATTTCATGTGATCCTGCTCTGCTGCCTGAACCCAACCACGTCATGCTCAACCATCTTTATGCACTCTCGATAAAGGATGGTGTGATGGTCCTCAGTGCGACTCACAGGTATAAGAAGAAATACGTCACCTCTCTGCTGTATAAACCCATCTGAGAGTCAACGTCTGTGTTGTACTCCTGCTCCATCTAGCTGACATTGTACTACACACCCAGCTTACAGTGGTTCTGACAgccactgtctctcactctcacactaatgatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtccaccaCTGTATGATCAGGACTACTGAACTGTACTTCACACGTAGAGATTGCAATCATGAGCtttgtaaaggttttttttttccccccttcctCTCCGCTATAAAGCGGATGCTAAAATAGGTTTGGTGTTTTAAAGAGAGGTCTGAAGCGGTTTTGGCGTGGTTTAAAATAGCATCATGTTAACCAATGCTGATTTATGACTGAGATGTGTGTCATTTTAGAGTTtccattgttttatttattgaactTGTGATAATCACATGTTTAAGTATCTGCTTGCAGGACATAAAAAGGGCTTTGCAGATGAACTTATATTAAGTTGTAGGACTGACTGAATAGGTTGAGGGATTTTCTGCCTGGCCCAAGGCTGAGGTAtagtttgaaaaaataaaagaaagatatGAATTGGCTCT
>XM_026925890.2
GGAATAAAACGCGTTTCAGTACGGCTTCTAGTTTGGACGTCCGGCGTGCCGTAGTTACCGAGTGAACGTCAAGAATGTTTTTGAAGTTGGAGcagaaagtaaagaaataaagaaatcctGGTTTGGCTGTTAGAGGAGGAGgcgtctctctgtgtgtagctATGGGCAATACGAGTGACCGTGTAGCTGCAGATCGTCATGGACCAAAATCCCATCGTGCAGATGGTGGTGCCCAAAAAGACCATGAACCCAGCAAGATGGTGGACAGCACGGATGATCCTAACATCTTTAACACACACGGACCTGAAGTAAAGGCTCCAGTGGAGAAGGATTTGCCTCCAGATTTAAATGACTTGGCGAAGGCGGGCACACAGGAGCGTCCAACCGTGATCCGCTGGGCAGGAGGAGGGAGAGACGTCTACATCTCCGGCTCCTTCGACAACTGGAGCACCAAGATCCCACTTAATAAAAGCCATAATGACTTTGTTGCAATCCTGGACTTGCCTGAGGGCGAGCATCAGTACAAGTTCTTTGTTGATGGCCAGTGGCTTCATGACCCTTCTAAGccAGTTGTGACCAGTCAGATGGGAACCATCAACAACCTGATCGAGGTGAAGAAATCTGACTTTGAGGTGTTTGATGCGCTGCAGGTGGACTCTCTCGAGTGCTCCGACACCTCTGatctgtccagctctcctccTGGTCCTTACGGACAGGAAGTGTACATGTTCCGACCAGAGGAGCGCTTCAAGGCCCCGCCCATCCTTCCTCCTCACCTCCTCCAAGTCATCCTCAATAAAGACACAAACATTTCATGTGATCCTGCTCTGCTGCCTGAACCCAACCACGTCATGCTCAACCATCTTTATGCACTCTCGATAAAGGATGGTGTGATGGTCCTCAGTGCGACTCACAGGTATAAGAAGAAATACGTCACCTCTCTGCTGTATAAACCCATCTGAGAGTCAACGTCTGTGTTGTACTCCTGCTCCATCTAGCTGACATTGTACTACACACCCAGCTTACAGTGGTTCTGACAgccactgtctctcactctcacactaatgatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtccaccaCTGTATGATCAGGACTACTGAACTGTACTTCACACGTAGAGATTGCAATCATGAGCtttgtaaaggttttttttttccccccttcctCTCCGCTATAAAGCGGATGCTAAAATAGGTTTGGTGTTTTAAAGAGAGGTCTGAAGCGGTTTTGGCGTGGTTTAAAATAGCATCATGTTAACCAATGCTGATTTATGACTGAGATGTGTGTCATTTTAGAGTTtccattgttttatttattgaactTGTGATAATCACATGTTTAAGTATCTGCTTGCAGGACATAAAAAGGGCTTTGCAGATGAACTTATATTAAGTTGTAGGACTGACTGAATAGGTTGAGGGATTTTCTGCCTGGCCCAAGGCTGAGGTAtagtttgaaaaaataaaagaaagatatGAATTGGCTCT

Function

symbol description
prkab2 Predicted to act upstream of or within fatty acid biosynthetic process and regulation of catalytic activity. Orthologous to human PRKAB2 (protein kinase AMP-activated non-catalytic subunit beta 2).

NR:

description
PREDICTED: 5'-AMP-activated protein kinase subunit beta-2

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925889.2 True 1520 mRNA 0.47 8 13299513 13305437
XM_026925890.2 False 1514 mRNA 0.47 8 13299508 13305437

Neighbor

gene id symbol gene type direction distance location
sema4e LOC108280345 coding upstream 14256 13267754 ~ 13285252 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding upstream 34061 13253610 ~ 13265447 (+)
sh3gl1a sh3g1,LOC108433099 coding upstream 57571 13217490 ~ 13241937 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding upstream 83451 13185931 ~ 13216057 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding upstream 284954 13004794 ~ 13014554 (+)
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding downstream 84730 13390167 ~ 13410811 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding downstream 116887 13422324 ~ 13425966 (+)
LOC113533157 LOC108280702,LOC108433088 coding downstream 131598 13437035 ~ 13565203 (+)
LOC113533215 LOC108280868 coding downstream 266272 13571709 ~ 13587075 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding downstream 331028 13636465 ~ 13658131 (+)
G319340 NA non-coding upstream 54238 13202033 ~ 13245270 (+)
G319275 NA non-coding upstream 141779 13156524 ~ 13157729 (+)
G319334 NA non-coding upstream 150646 13148652 ~ 13148862 (+)
G319330 NA non-coding upstream 159026 13140274 ~ 13140482 (+)
G319318 NA non-coding upstream 196900 13102347 ~ 13102608 (+)
G319382 NA non-coding downstream 58388 13363825 ~ 13411607 (+)
LOC117599983 NA non-coding downstream 113118 13418555 ~ 13421383 (+)
G319415 NA non-coding downstream 199669 13505106 ~ 13510727 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding downstream 284162 13589599 ~ 13590316 (+)
G319867 NA non-coding downstream 551528 13856965 ~ 13894441 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 144981 13021142 ~ 13154527 (+)
G319170 NA other upstream 496489 12765055 ~ 12803019 (+)
G318439 NA other upstream 1830009 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1834739 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2565420 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 531996 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 774812 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1080801 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1332344 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1521805 14827242 ~ 14828778 (+)

Expression


Co-expression Network