sema4e (LOC108280345)


Basic Information

Item Value
gene id sema4e
gene name LOC108280345
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13267754 ~ 13285252 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314561.1
gtgtagcctgtTGTGGCGTGTCCTTTCTCCTCAGCCCCACGGAGAGAGAAATCTAACTGTAGCTCTTTCACACTTCACTGCGGGACTCTAGCAGTTTGACTTCCAAAGCAACAATGCAGCCTACTTCATGAGCTCCACTCACACTGGCCTGGAGGAGAGACAACAACTTACCCACACTGCCTTGTAGCACTGAGCCCCTCctttttacactttaaaattTACTTGTTTTGCTTAACGGACAGGAGGAACATGTGTCGGATCAAGCTGCAAAGCTGCAAAGAGACTGAGGGTGGCTTACAAAAGATGGCTTCACACGGTTCCTGGTTCTTTGAAGAGGCAGCCTACCTGAATAAAACCAAGCTATATATCTCGGTATGAAGGCGGTGTTGACTGGAGAAGAAAAGTAACGTAGTGAGGCTGAGGTTGCAAAGCGCGGGCAGAATTTCAATACTTTACAGTGTGACCATTTGAGAGACTAAGAGTGGCCTTGTGCTGTAGCAGAGACTCGAAGAGCTAAGGACATGTTGCTCCTCCTCATACTGTCTTTTTGGGGTCCAGCTGTATTGACTTCTGGCCAGGTTAGGCCTTTGTACGGCACACCAAGGAAAACATTTACTCTGAGCAGTAACAGAGGACATGTTTTTCGAGAGGAGGGAGTGTGGAACTACTCCACCATGCTCCTGAGGGAAGACATCGGTGTGCTCATCCTGGGCGCTCGAGAGGCCATCTTTGCCCTGGACCTTGCTAACATCACCCACAAGAAATCTATGGTAAAGTGGGAGGTGACTCCAGAGATGAGGAAGACTTGTTCAAACAAAGGGAAAAATTTGGAGACTGAGTGTCAGAACTACATCCGGATCCTTCATAAAATGCCAGACGGCAGGATGTATGTGTGCGGTACCAATGCTTTCATTCCAACGTGTGATTATATGTCTTACACAGACGGCATCCTGGCTCTGGAAGGTAAACAACTTGATGGGAAAGGAAAGTGTCCATTTGATCCTGTCCAGAGATACGCCTCTGAACTTGTTGATGGAGAGCTATATTCTGCTACATTTATGAATTTCCTGGGCTCAGAACCGGTTGTGATGCGAAGCTTAAATGACACCATACGAACTGATTTCTTGACTTCCTGGCTCAAtgAGCCCATTTTCATTGGCATGAAGCACGTGGCTGAAGGAAAGGAAAACCCACAGGGGGATGATGACAAGATTTACCTCTTCTTTAGTGAAACAGCTGTGGAATACGACTCCTACACTAAGCTGGAAGTGTCAAGGGTGGCCCGCGTCTGTAAGGGGGATGTGGGAGGACAGCGGACATTGCAGAAGAAGTGGACATCATTCCTAAAGGCTCGTCTGGACTGTCCTCTCCCTCAAACCAAACTGCCTTTCCTCATGCAGGATGTGTTCCTCTTCTGCCCAGGCAATTGGACAACCTGTGTGTTCTATGGAGTCTTCACTCCTCAGATGGACATGTCGCAGTACTCTGCAGTGTGCGCCTACAGGATAGAAGACATCACGGAAGTGTTCTCTGAAGGCAAATTCAAAACACTGCACAATGAAAATTCCATTCCAAAATGGGTGACATACCACGGAGATGTGCCTGACCCCCGTCCCGGAGCTtgTATTAACAATGACGCAAGGCAGAAAGGGTTTTCAAAGTCCTTGGACCTGCCTGATAAAACCCTTCAGTTTATCAAAGACAGGCCACTGATGGATCAGGCAGTGAAGCCGCCTTCCCAGCAACCCCTACTGGTGAAGAAAGGAGCTGCGTTTACATGTATAGTGGTGGCCAGCACTACTGCCCTGGATGGGAGCATCCATCAGGTCATGTTTATTGGCACAGCAAGCGGTTCAGTGCTGAAAGCAGTCGACTATAACGGAAATATGGTGATAATAGAGGAGGTGCACCTCTTTAAGCATTCTGAGCCAGTGAAGATACTGCGCCTCTCCACCACCATGGGTCAGCTGTATGCAGGCTCAGAGGTGGCAGCGGTGCAGATGCCACTCAGTACGTGTGACCATTACACCTCCTGTATGGACTGTGTGCTGGCCAGAGACCCCTACTGCGGCTGGAACCTCATCTCTAACAGCTGCATTGCTATAAACAGCGCTCGACCAGATACACACGGTGAGGTGGTTCAGAGTCTGAGAGATGGAAATGCTACACGTTGTCCTGCAGTCGAGAGCACTAAGACCATTAAACTCTTCCACCCGGGTAACATGGTCAGGCTGCTGTGCCAGCCGGGATCAAACCTGGCCCGAGTGCAGTGGCGTGTAAACGATCACCCAGTTGAAAACTCCAACATGTACCACATTCAACACAACACCCTGTTCATCCTTAATGCCTCGGACAGCGATACCGGCCACTACACCTGCACCTCTGTAGAGTCCTCCAATGGCAAAGACTATGTCACCAAAATTGCTACGTATGAGCTGAGGCTGTGGAACATTCAGATGGATGCTTCGGTCCAGCCGCAGGTGCAGGAACAGCGGAACACCCTCTTGGCCCTCCAAGCTGTAGTCACCATCCTAATGCTGGTATTAGTGGCGCTTGTGACATGGAACTTCTACAAAGGGCATATCACCATCGCGAGATGCTTCAATAAAACTGAGGAAAGCCCACGGAGTATGTCTTCCTATTAGGAACCACTGCAAACAGTAGACAGAAATAAGGCAGCagcaacagtaataataatcagaacAGAATAACTGGATTCTCCTTCAGCATAATGGACATAAAGAGTTGTAGAGAAGTTTGTTATTTATATACCTTATTCTGCAGACCCTCACAGACCAATCCAATATAATACAGTTCCTTAGGTCAAACCACACACTCTGGATTGTTTGGAGTTTTAATACAGACTGAGACTGTGGACCTTTTGCAGAGTATTTTCCAGAAATAGTTTTATTATACATGTTTCATTACTTAGTATTATAGTGTGctttcagtaacactttaaaGCCCTAATGCACTGAAATGGTTTTAAGTACAGCATGCTTTGTTGtcgatttaataaaaaaaagtcaagctGCCAAATGGATTTGAAGATGTATTGAAGATATATAGACTACTAGACAGGATTATAGAATCAAACATCCATAAGAATTGACCATAATCcgtgttctgtttttttttaatgctataaaaatatattcagtgGATGAGAATGACACCACCACCAGTTTGCAccagtttttaaatgaacaaatcagTCGAACTGTagctaaattttttttgtgaaggtCTCAGTGCACATCTGGAGCCCGTGCACGTCTTTTCAGATAGAGATATTTCTTTCAACATCTGTGCCAGAAAACATATTTCACACATCCAGACCTCTACGCTgtacttttaaaatgtgtgctgTTCAAACTTGCAGCTTCTGAAGCCTCCAGCTTCAGAGCTCAGTTGCCAGTACAATAACTCACTGAAGCTTGCAGAACTTACACCGCTCTTATTGCTCACTGTGTAACGTCTTTGAAATTCTAACATTCTGTGAGGAATTGATTTGTTTTCGGATTAAAAGAAACTGTGAATTTG

Function

NR:

description
PREDICTED: semaphorin-4E-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314561.1 True 3543 mRNA 0.46 15 13267754 13285252

Neighbor

gene id symbol gene type direction distance location
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding upstream 2307 13253610 ~ 13265447 (+)
sh3gl1a sh3g1,LOC108433099 coding upstream 25817 13217490 ~ 13241937 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding upstream 51697 13185931 ~ 13216057 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding upstream 253200 13004794 ~ 13014554 (+)
LOC113533117 LOC108280188,LOC108433071 coding upstream 284905 12968314 ~ 12982849 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding downstream 14256 13299508 ~ 13305437 (+)
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding downstream 104915 13390167 ~ 13410811 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding downstream 137072 13422324 ~ 13425966 (+)
LOC113533157 LOC108280702,LOC108433088 coding downstream 151783 13437035 ~ 13565203 (+)
LOC113533215 LOC108280868 coding downstream 286457 13571709 ~ 13587075 (+)
G319340 NA non-coding upstream 22484 13202033 ~ 13245270 (+)
G319275 NA non-coding upstream 110025 13156524 ~ 13157729 (+)
G319334 NA non-coding upstream 118892 13148652 ~ 13148862 (+)
G319330 NA non-coding upstream 127272 13140274 ~ 13140482 (+)
G319318 NA non-coding upstream 165146 13102347 ~ 13102608 (+)
G319382 NA non-coding downstream 78573 13363825 ~ 13411607 (+)
LOC117599983 NA non-coding downstream 133303 13418555 ~ 13421383 (+)
G319415 NA non-coding downstream 219854 13505106 ~ 13510727 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding downstream 304347 13589599 ~ 13590316 (+)
G319867 NA non-coding downstream 571713 13856965 ~ 13894441 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 113227 13021142 ~ 13154527 (+)
G319170 NA other upstream 464735 12765055 ~ 12803019 (+)
G318439 NA other upstream 1798255 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1802985 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2533666 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 552181 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 794997 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1100986 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1352529 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1541990 14827242 ~ 14828778 (+)

Expression


Co-expression Network