LOC117599983


Basic Information

Item Value
gene id LOC117599983
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13418555 ~ 13421383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580330.1
TTACGCGTCTAATGAGAGTATATTTAGGAAGCATATGGCTTCATtggttataatttttttttttttttttttattcttgccTGCCTGAGAGCCTTGGTGATTAGAAGGCGCTTGTAAAAAAGCAGAGAGGGGAAATGCAATTGGCCGGATCGTGGAGTCGTCACCGGTAATAAGCCGTCCCTCCGTCTGGCGCGGacagtatataaacacacaggctTTCATCTCTCCGCGAGCCGCCCAGTAACATCACCGCTACGGCTACGTGCGACGCAAAGTGGGCGGGGCCAGATGACTGACACTTGCTTCGACGGCAGCCGGAGACAACGAGCGGAGCGGCCGCGACGTTCCtgattaagataaaaaaaataataataataatatgaaaaaatgcCCCGACGTTGTCGCCTGTTGGTCCGGcgttttgaggggaaaaaaggccaGGATATACAGCACGTCTGTCTATTGAAGTCTGAATGACCTGCAGTGCTGGGTGGAAGACTAGTGATTTTGTTGTGATACTGAACAAAGAGACCAACAACAAAACCCAGTCTACCTCTCAGCACCGGGAGCAATCGTCATACCGGACCCCTGCCAGCTGCAGCGTGGGAAAGGTGGATAGACGGAATAACGGAAATGCCATGGTTGGAATTTGGTGTATGGTTTAAAATGTGCATTTCTAAAACAGGGATTATTGCAAGAGTCAAAAAATGttcactacaaaaaaaaaaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580330.1 True 744 lncRNA 0.46 2 13418555 13421383

Neighbor

gene id symbol gene type direction distance location
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding upstream 7744 13390167 ~ 13410811 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding upstream 113118 13299508 ~ 13305437 (+)
sema4e LOC108280345 coding upstream 133303 13267754 ~ 13285252 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding upstream 153108 13253610 ~ 13265447 (+)
sh3gl1a sh3g1,LOC108433099 coding upstream 176618 13217490 ~ 13241937 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding downstream 941 13422324 ~ 13425966 (+)
LOC113533157 LOC108280702,LOC108433088 coding downstream 15652 13437035 ~ 13565203 (+)
LOC113533215 LOC108280868 coding downstream 150326 13571709 ~ 13587075 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding downstream 215082 13636465 ~ 13658131 (+)
LOC113533233 piezo2,LOC108414168 coding downstream 299583 13720966 ~ 13807258 (+)
G319382 NA non-coding upstream 6948 13363825 ~ 13411607 (+)
G319342 NA non-coding upstream 112412 13239147 ~ 13306143 (+)
G319340 NA non-coding upstream 173285 13202033 ~ 13245270 (+)
G319275 NA non-coding upstream 260826 13156524 ~ 13157729 (+)
G319334 NA non-coding upstream 269693 13148652 ~ 13148862 (+)
G319415 NA non-coding downstream 83723 13505106 ~ 13510727 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding downstream 168216 13589599 ~ 13590316 (+)
G319867 NA non-coding downstream 435582 13856965 ~ 13894441 (+)
LOC117595740 NA non-coding downstream 483144 13904527 ~ 13910280 (+)
G319886 NA non-coding downstream 487480 13908863 ~ 13909635 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 264028 13021142 ~ 13154527 (+)
G319170 NA other upstream 615536 12765055 ~ 12803019 (+)
G318439 NA other upstream 1949056 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1953786 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2684467 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 416050 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 658866 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 964855 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1216398 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1405859 14827242 ~ 14828778 (+)

Expression


Co-expression Network