twsg1a (twsg1,tws1a,LOC106579643)


Basic Information

Item Value
gene id twsg1a
gene name twsg1,tws1a,LOC106579643
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13988603 ~ 14003700 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925092.2
tgtgtgtgtgtgtgtgtgtgtgtagcagacACAGGCTTAACACCAGCAGCTGCTTTCTGATCCACACGgtgtgtatgtatgtatatataccgGAGTGGTGAGGATGAGGTCggctctcctcctccttctccttctctcctcacTCTGCTCCCTCCTCCTGCTCTCCCACATCCCGATCATCTCGGCATGTAACAAAGCTCTGTGTGCCAGCGACGTGAGCAAGTGCCTGCTACAGagcctGTGTCAGTGTCGACCATCGGAAGGAAACTGTTCCTGCTGTAAAGAGTGTATGCTGTGTTTGAGCACACTATGGGAAGAGTGCTGTGACTGTGTGGGCATGTGTAACCCGAGGAACTACAGCGAGACCCCGCCCACTTCCAAAAGCACAGTGGAGGACCTCCATGCGCCGATCCCGTCACTCTTCAGGGCCCTCACTGATGGAGACACTCCTATCAACATGATGGTGGTGTCGTTCCCCGTGGCTGAGGAGCTCTCGCACCACGAGAACCTCGTGTCCTTCCTGGAGTCTCTGGAGCAAGAGCATCAAAATGTCTCGCTGCCTGGGACAAGCATCCACGACACCTATGATAAAGATAACCTGTGCACGGTGGTGTATTTTGACGAGTGCTTGTCTATACGTCAGTGTAAGCAGTACTGTGAGTCGATGGGAGCGTCAAAGTACCGCTGGTTCCACAACGCGTGCTGTGAGTGCATCGGGCCTGAGTGTGTGGATTACGGTAGCAAAGCGGTCAAATGCATGAACTGTCTCTTCTGAgagcgctcacacacacacacacacacactctcacatggGATTGTGTTTCAGTATCTTATGGTTATTCCATCTTTTATTGCTGATGATGTGTAATATGATTTTAGTTTTCTTTGCAAAAAAATGGGTACAGTCCATCTTTCctgacattattaatattaattgttGATGATCTCAGCACAAATGATTGTGTGCTTAACCCTTTCCTGTCTGTGCAGTCTGTATCATTGTTAGGCACTAGATGGCACTCTCTTACAAAAAAGCTTCCTGTCTGATCACATAGCGAAGAGAAAGTGTATATACCATTAACCATTAATGCAGAAGAAGCAGTGCTTTGAAATCATAtataagtattattatttatatacagtatgaaacCTTTGTTCAAAGAAACCTATTGCACAAGAAGTCTATACCACGTACAGTATATCTACAGGTAATGCGTTACATTATGGTTCCCTTAACTggcattatttaacacattagttaacatgaacaaaccatgaacttcagcattaatgcaccataattaacattaacaaattaactAACACTTATATTAATTGATTGATGAATAAGAAACCAAATAAGCCAAAATATTAACCAACGTTCATACCATCATGAATAAAATTAAGCTCACAATGAGCAATATGAACACCTTAATGAACAGACCTGACActgaatacatacatatatatatatacacacacacacacatacacacacacagctagagACCAGAGTGTACAAAGTTCTCATTTTAGTAAATACACTGAAACCTAATTTCtacatggatttatttttattcgtGGATTGACAAGCTTAAGCCTGgtgtatttcattaacatttaaacaaacatcagtTAGActaatatgtgtgtttataccacaattctcaaatctgattggtcagaaagtgttgattactttctataatagcagctttggtaatagttccagctgcaagacaaatcacaagtttctattaattctattaatgcgtttttgtttctatagtaacaactcgttcacagggacgtgtatagCAAATGCTCCGCATATGccagcttttaaaaaatgtgttgttatttctcAAAGCAAAATGACTGccatggtgaagctttctgtgaggagaacattaatggaaggagtctccagtgccagcgctttgtaactgtcagtgaGTTGttcaccacaggaaagtcttcagattattttgcacttttttctgacttattaaaacattaaatgtaagcatTAATGGATAAACATACAGCATGTctttcattaatgaattaaaaaatgtaaacttggatgtgctgttattggaaaacacacacttgtcctTGATGATTTTCCTAAACCAGCATGccatgatgtgttttattcctatttactttctaaacattccttatggtttattaatgctgaatttcatcatttcttaatgcagtaaatatgttaataaacaGAAACCTTAATGGAAAGAGTTGCCAATGTATTCTTTTTTCGAAGATATGTTTGATAATGAAAACATTCAGGCAATATTTACATTCAGTTGACTGttttagcaaaaataaactGGTAGATTTTTGAATTTGACAAAAATAGCATTCGCTTCAGTAACATCACCAATAAACCATGCACCATTCTCA

Function

symbol description
twsg1 Enables transforming growth factor beta binding activity. Involved in several processes, including negative regulation of CD4-positive, alpha-beta T cell proliferation; positive regulation of pathway-restricted SMAD protein phosphorylation; and transforming growth factor beta receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

NR:

description
PREDICTED: twisted gastrulation protein homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925092.2 True 2427 mRNA 0.39 5 13988603 14003700

Neighbor

gene id symbol gene type direction distance location
ankrd12 ankrd12,LOC108280287 coding upstream 3547 13949726 ~ 13985056 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding upstream 40811 13932646 ~ 13947792 (+)
rab12 rab12,LOC107696134,LOC107750912 coding upstream 153788 13820665 ~ 13834815 (+)
LOC113533233 piezo2,LOC108414168 coding upstream 181345 13720966 ~ 13807258 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding upstream 330472 13636465 ~ 13658131 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding downstream 2657 14006357 ~ 14015371 (+)
sirt6 sirt6,LOC107667852 coding downstream 340894 14344594 ~ 14372193 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding downstream 434663 14438363 ~ 14450439 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding downstream 477976 14481676 ~ 14487383 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 546609 14550309 ~ 14594321 (+)
LOC117595739 NA non-coding upstream 69457 13911571 ~ 13919146 (+)
LOC117595740 NA non-coding upstream 78323 13904527 ~ 13910280 (+)
G319886 NA non-coding upstream 78968 13908863 ~ 13909635 (+)
G319867 NA non-coding upstream 94162 13856965 ~ 13894441 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding upstream 398287 13589599 ~ 13590316 (+)
G320003 NA non-coding downstream 14241 14017941 ~ 14018154 (+)
G320004 NA non-coding downstream 15129 14018829 ~ 14019036 (+)
G320032 NA non-coding downstream 133962 14137662 ~ 14140523 (+)
G320033 NA non-coding downstream 136980 14140680 ~ 14186212 (+)
G320057 NA non-coding downstream 185040 14188740 ~ 14189014 (+)
LOC113533270 mtcl1 other upstream 90689 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 834076 13021142 ~ 13154527 (+)
G319170 NA other upstream 1185584 12765055 ~ 12803019 (+)
G318439 NA other upstream 2519104 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 2523834 11399884 ~ 11464769 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 76549 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 382538 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 634081 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 823542 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 1060021 15063721 ~ 15066371 (+)

Expression


Co-expression Network