dnaaf6 (pih1d3)


Basic Information

Item Value
gene id dnaaf6
gene name pih1d3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9943753 ~ 9952320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925101.2
attgaattgaattgaatcttcCAGAGTTTCCATTTTCCCTTTCTTAGAAGCAGGTTTAGTTGGGGTGTCGGGAAGATGAGTTGAGCAAAGAGTATCCAGAGTATTTCCAAAACCGGGATCAGTAACAGCAGGAAGTGTATATCTACAGATACGTCCATCAGACTTTTCACCCGTTCTTTACGTTTTTCAACACTTTTTGACATATTTATTCCACAGTTACATccttaataaaacacacagcggATGTGTAAGGTAAAGAGTTGAAAGCAGACAGTTTACGGGagttataatattttttgtcagCAGAGCTACTAAAAGTTATCTGAACATGCCGCCATCTTGGAGCCTCTAGCTCAAATTTAATCATCTTcccaatgcatttttttccGGGTCCTCCGTGATCAAAAGGAATCCGCCCAATCTGGCGACACTGCACGTAGTTACCCCTGGCAACAGTTAATCTCCTTGGAAACGGTAAACAGTTCTACAGACAGCTCAGCCTCTGTCTGTAGCCTCTGAGACTTTTACAGTCCATACATCTAATTACATAAAggtaatagaaataaaatggtGGAGTTGTCATCTCTCCGAAATCTTCAGGCTCTGTCCGACTTGCTCTCTCTACCAGCCGATGAAGAAAGCGACGCAGAAGACTGCAAGAATGTAAATCTGATGGCAAACATGGGTCCTGGGCACATTGGTGCTTGTTCTTCTACTTCTAGGCAAGACAAGAATGCAGTCAATAGTGCCTATGTGAAGAACACCAAAGACATCTGGGATGTAGAGGAGGTGACTGGAGGGACACACTTTGATGACCTTGCAGATCCACGTCCTCAGCCTGAgtatgagATTATCCTGAAGCAGAGTGTGGGTACTGAGGACTTGTTTCTGGGCATGAGCCGAAAGGATCCATCCTCCATGTGCTGTGAGAGCATGCTAGTGAGGGTAAAGCTACCGGAAACTAAGGCTTCTGATCTTGTGCTGGATGTGAAGGAGAGATTTGTTGACCTAAGAACTCCAAAATACAAGCTAGGCCTGCATCTGCCCCACTCAGTGCACAGTAAGGAAGGCACAGCCCGATTCATTACAGAGAGATATGAACTGGAAATCACACTGCCCACGAACAGACCTATGGACTCCATCAACCTCACCTGAAGAGAAGGAATGAAGAACTCATGGGCTGCCTCTGAAGAAAAAGAACTGTCATCAGTGGCTGGAAAAGGAAGACTTCATagaacagaaacatttcaaGGAACATCAAGCTATGGATTGTTTCCAAGTATTTCGAGCCACAATCAACTGTTTTGGGCTTGTACCATAAACCctcttaacattttaaataaaatttgcaattactatgtttttaaa

Function

symbol description
pih1d3 dynein assembly factor 6, axonemal

NR:

description
protein PIH1D3 isoform X1

GO: NA

KEGG:

id description
K24253 DNAAF6, PIH1D3; dynein assembly factor 6, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925101.2 True 1368 mRNA 0.43 6 9943753 9952320

Neighbor

gene id symbol gene type direction distance location
fndc7a LOC108280340 coding upstream 82605 9829378 ~ 9861148 (+)
LOC113533145 NA coding upstream 115865 9788997 ~ 9827888 (+)
LOC113533645 arhgap12,LOC108280343 coding upstream 301109 9532677 ~ 9642644 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 724652 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 780559 9033569 ~ 9163194 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 28866 9981186 ~ 9989044 (+)
lig1 lig1 coding downstream 51336 10003656 ~ 10034015 (+)
mpz mpz,LOC106600490 coding downstream 90568 10042888 ~ 10053540 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding downstream 108906 10061226 ~ 10130722 (+)
sdhc sdhc coding downstream 221500 10173820 ~ 10186067 (+)
G317633 NA non-coding upstream 3516 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 63997 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 67933 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 124288 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 128096 9815277 ~ 9815657 (+)
G317703 NA non-coding downstream 153446 10105766 ~ 10106921 (+)
G317754 NA non-coding downstream 204957 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 233986 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 551843 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 565268 10517588 ~ 10520208 (+)
G317390 NA other upstream 528589 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1130343 8811595 ~ 8813410 (+)
G316745 NA other upstream 1674555 8268709 ~ 8269198 (+)
G316744 NA other upstream 1679692 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 2186792 7751694 ~ 7756961 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 6673 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 584111 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 611501 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 778026 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1447564 11399884 ~ 11464769 (+)

Expression


Co-expression Network