fndc7a (LOC108280340)


Basic Information

Item Value
gene id fndc7a
gene name LOC108280340
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9829378 ~ 9861148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297744.1
CGTATGCCCCATGCACCTCCACCTGTGCGTAGGCTGTATGAATTGAGCTCAGTGTACATTTCCCCGAGTGTCAGAGGGAAGCAGGACACAATGTCGATAGAACCTGCACAGTAAGGAGGAGCTAAAGACATTATAGTGTGTACCCTCACAACTAGTAGGACAAACACCAGTAAGCGTCAACGTGCCCCAAGACAGCGAGCAGATTGCTTAGAATCGAAGATATGGGATCGGAAGATTTGCGTTTATTAACAATAATCTTAATGATCATGTGCACATCGAAGATGTGTGCGGGGCAAAACGaCATAACTGTGTCCGTTTTCACCGTCACGTCTAAAAGTATGACGGTTCTCTGGAGCGGACAGTCTGACGCGAGCTCCTTCAATGTGACCGCCACACCGAAAAACTCGCGTGAGCAGCCCGTGTTCACGCAGTTCAGCAGCAGCACGGTAATGGGCTCCGTGAACTCACTCTCCCCGAACACGGTGTACACGATGCGTGTGGAGTCTATGAACAGCTCCGTGAACGTACTCAGCAGCGCCGAGACCGAGGAGACAACGGCACCCGAGGTTCCTTCCATTGTGCAGGCCTACTCCAAACACAGCGACAGCATCACAGTGGAATTTCGCGAGGTGTCAGGTGCCACGGCATACATCCTGCGGGCAGAGAACAATGACGGATTCTTTTCAGAGAGTGTGGTGTATAGCTCGCCAGGTACCATACTCAACCTGAGGGCCTACACCAATTATACACTTAGTGTCATGTCAAGGAACAGTGGTGGCCGTAGCCAGCCCTCATGCCCAGTCTATGCCAGGACAGTGGTTGTAGCCCCAGCACTGCGCTCTGTGTCACCCACTGAGGACAGTATTGTGGTGAGCTGGGATCCCGTGGAACATGCAGTTCAGTATACACTGTGTGTCATCATGGAGGAATCAGATGCCCTGTTCAAGGTCAATACCTCCCAGACCAACATGACATTCAGCAGTCTAGATCCAGGGGTCACTTACTGCATCAAAGCCACAGCCTGGGACCCCAATAGCATCCCTGGAGATGACATTACCATCTATCAGATCACCCGTCCCCCTGTTCCTGCAGGTGTGCAGGTTTCACTGACCCTGGAGAGAATCATGGGACTAGCTGTATATTGGGAGGCTGTGCGTGGTGCAAGTCTCTACTTTGCCCTGAGCTCTATGGGGCAGAACTGTACCTCCATGGGAGACCCGTTCTGCATCATCAGCCCTATAGGATGCAGTGAGAACCACACACTCACCGTCATGGCTGAGAACCAAGCTGGCCCCAGCAGCCCATCCCAGCCAAAGGACCTGCTCACCTTCCCATGCCCTCCAGTCTCAGTGGAGGTAGATGAGCCCTCTGTAGGGAACTGCTCCGTGACATGGACCAGGGTTCCATGGGTGGAGTACTACATGGTGTACATAAACAGAGATGATGGAGCAGAGGAGCAGtgcaacaccaccaacaccatctgCTATTTCCACTGCGACTGTGGCTACACCTACATGACTACTGTATTTGTCTACAATGTGGCTGGTGCCAGCCCTCCAGGACCAATTCTCAACTACACCACTGTCCCCTGCTGTCCACAGAATGTTTATGTCTCTCTTGTTTCGACGGAGACACTGGAGGTCACATGGCCAGCAGTGCGTGGAGCAGATCTGTATGAGACTGTGGCGGCAGATGGATcagacacactgcactgcactgacACCGTGCCCATATGTGCCCTGTCTGACCTTACCTGCAACAGCCTGTACAGTGTTGTAATCAGACCCTGCGGTGAGATACGTGGCTGCAACAATACCTGCACAccaaaaacacaggaaacagccCCATGTGCTCCTGAGATCCTGAACCTCACCCAGGTGAGCAGATCTGCTGTGCAGGTATCATGGAGGGCTACCAACAAACAAGCCAACTACACAGTGAATGCTTTTGGCAGTGCCAGCACCCTTACTTGCTCATCCACCAATACTTCTTGTGGTATCACCAACCTACCTTGCGGGGATACTTATGAGGTCAGCGTATACGCCACCACCACTGTGGGGCATAGTTTGCCCAGCTATAGCATCACTATGGAAACAGGACCCTGCTGTCCCGAGACTCTCAGTGTGGAACAGGTGACACAGTCCATGACCAGTGTGAAGTGGTCATCCTCCAAGGGAGGCTGGTCTTATGTCACCTCGCTGTCATCATCACGAGGTCATGCAAAGTGCCATACCATGGACACACACTGCTTAATGGGATGCATCACATGTGGCACCAACTACAACGTCTCAGTGGAGGCCATGAGCATTACGGGACACCAGTCCTTATGCAACTATCACGGCTTTTCTTCCAGCACTTGTTGTCCTTCTGGTGTGAGGCTGTACCGAATGGTCAATAACACACTTCGTGTGTCCTGGAGAGGTTCAGATAGTGTCAATGGGTACTCAGCTGAACTTTCCAGCAACAGCGCCAACTACACATGCAGGCCAGTGCTGGGTGTCAGCTCATGTGACATAGACAGTGTACTGTGTGGTGACACCTACAGTGTGGTGGTTGCACCACTCACACTCCAAGGTTCCAAAGTCTTATTCTGCCCCAGGAGACTATACTCTGTTTCCTGTGTTGGCAACAGTGTTGGAATGGTTATTTATCGTGGAAAAAGGAGTGTGGATTAGCAGCTTCCATTTTAAGGGTCTCTCTGTCAATTGAGAgGCCattgagaaaatgagaaaaggagaagaaaaactTTAAAGAGTAGGaatatatacttatattatACATAGTTTcctttatactgtataccaaGGATTAATGGAATAGATtatcaaatgttaaaaattatataatttgccaTTACCCTCTTTGTGTTGGCATACCATATTtagataaatgtatttataaagtgGCAGGCAATTTAGCAGTGAACTATACTATGAATGTCTGTTCATAATTACTGTTATTGTATCTGgataaaatatttgaaagaaaatatttgaactccaccaaaatataaatctttaaaacaaGTATAAATGTGTCTCGGATGTGGGTTATATGTGGGTGACAGTAAGTTCTGAGACATGAATGTGATTTTGATTATGTACAAGATAGTTTATATATGTTGATGGCTTAC
>XM_034297745.1
AACGTATGCCCCATGCACCTCCACCTGTGCGTAGGCTGTATGAATTGAGCTCAGTGTACATTTCCCCGAGTGTCAGAGGGAAGCAGGACACAATGTCGATAGAACCTGCACAGTAAGGAGGAGCTAAAGACATTATAGTGTGTACCCTCACAACTAGTAGGACAAACACCAGTAAGCGTCAACGTGCCCCAAGACAGCGAGCAGATTGCTTAGAATCGAAGATATGGGATCGGAAGATTTGCGTTTATTAACAATAATCTTAATGATCATGTGCACATCGAAGATGTGTGCGGGGCAAAACGaCATAACTGTGTCCGTTTTCACCGTCACGTCTAAAAGTATGACGGTTCTCTGGAGCGGACAGTCTGACGCGAGCTCCTTCAATGTGACCGCCACACCGAAAAACTCGCGTGAGCAGCCCGTGTTCACGCAGTTCAGCAGCAGCACGGTAATGGGCTCCGTGAACTCACTCTCCCCGAACACGGTGTACACGATGCGTGTGGAGTCTATGAACAGCTCCGTGAACGTACTCAGCAGCGCCGAGACCGAGGAGACAACGGCACCCGAGGTTCCTTCCATTGTGCAGGCCTACTCCAAACACAGCGACAGCATCACAGTGGAATTTCGCGAGGTGTCAGGTGCCACGGCATACATCCTGCGGGCAGAGAACAATGACGGATTCTTTTCAGAGAGTGTGGTGTATAGCTCGCCAGTGGTTGTAGCCCCAGCACTGCGCTCTGTGTCACCCACTGAGGACAGTATTGTGGTGAGCTGGGATCCCGTGGAACATGCAGTTCAGTATACACTGTGTGTCATCATGGAGGAATCAGATGCCCTGTTCAAGGTCAATACCTCCCAGACCAACATGACATTCAGCAGTCTAGATCCAGGGGTCACTTACTGCATCAAAGCCACAGCCTGGGACCCCAATAGCATCCCTGGAGATGACATTACCATCTATCAGATCACCCGTCCCCCTGTTCCTGCAGGTGTGCAGGTTTCACTGACCCTGGAGAGAATCATGGGACTAGCTGTATATTGGGAGGCTGTGCGTGGTGCAAGTCTCTACTTTGCCCTGAGCTCTATGGGGCAGAACTGTACCTCCATGGGAGACCCGTTCTGCATCATCAGCCCTATAGGATGCAGTGAGAACCACACACTCACCGTCATGGCTGAGAACCAAGCTGGCCCCAGCAGCCCATCCCAGCCAAAGGACCTGCTCACCTTCCCATGCCCTCCAGTCTCAGTGGAGGTAGATGAGCCCTCTGTAGGGAACTGCTCCGTGACATGGACCAGGGTTCCATGGGTGGAGTACTACATGGTGTACATAAACAGAGATGATGGAGCAGAGGAGCAGtgcaacaccaccaacaccatctgCTATTTCCACTGCGACTGTGGCTACACCTACATGACTACTGTATTTGTCTACAATGTGGCTGGTGCCAGCCCTCCAGGACCAATTCTCAACTACACCACTGTCCCCTGCTGTCCACAGAATGTTTATGTCTCTCTTGTTTCGACGGAGACACTGGAGGTCACATGGCCAGCAGTGCGTGGAGCAGATCTGTATGAGACTGTGGCGGCAGATGGATcagacacactgcactgcactgacACCGTGCCCATATGTGCCCTGTCTGACCTTACCTGCAACAGCCTGTACAGTGTTGTAATCAGACCCTGCGGTGAGATACGTGGCTGCAACAATACCTGCACAccaaaaacacaggaaacagccCCATGTGCTCCTGAGATCCTGAACCTCACCCAGGTGAGCAGATCTGCTGTGCAGGTATCATGGAGGGCTACCAACAAACAAGCCAACTACACAGTGAATGCTTTTGGCAGTGCCAGCACCCTTACTTGCTCATCCACCAATACTTCTTGTGGTATCACCAACCTACCTTGCGGGGATACTTATGAGGTCAGCGTATACGCCACCACCACTGTGGGGCATAGTTTGCCCAGCTATAGCATCACTATGGAAACAGGACCCTGCTGTCCCGAGACTCTCAGTGTGGAACAGGTGACACAGTCCATGACCAGTGTGAAGTGGTCATCCTCCAAGGGAGGCTGGTCTTATGTCACCTCGCTGTCATCATCACGAGGTCATGCAAAGTGCCATACCATGGACACACACTGCTTAATGGGATGCATCACATGTGGCACCAACTACAACGTCTCAGTGGAGGCCATGAGCATTACGGGACACCAGTCCTTATGCAACTATCACGGCTTTTCTTCCAGCACTTGTTGTCCTTCTGGTGTGAGGCTGTACCGAATGGTCAATAACACACTTCGTGTGTCCTGGAGAGGTTCAGATAGTGTCAATGGGTACTCAGCTGAACTTTCCAGCAACAGCGCCAACTACACATGCAGGCCAGTGCTGGGTGTCAGCTCATGTGACATAGACAGTGTACTGTGTGGTGACACCTACAGTGTGGTGGTTGCACCACTCACACTCCAAGGTTCCAAAGTCTTATTCTGCCCCAGGAGACTATACTCTGTTTCCTGTGTTGGCAACAGTGTTGGAATGGTTATTTATCGTGGAAAAAGGAGTGTGGATTAGCAGCTTCCATTTTAAGGGTCTCTCTGTCAATTGAGAgGCCattgagaaaatgagaaaaggagaagaaaaactTTAAAGAGTAGGaatatatacttatattatACATAGTTTcctttatactgtataccaaGGATTAATGGAATAGATtatcaaatgttaaaaattatataatttgccaTTACCCTCTTTGTGTTGGCATACCATATTtagataaatgtatttataaagtgGCAGGCAATTTAGCAGTGAACTATACTATGAATGTCTGTTCATAATTACTGTTATTGTATCTGgataaaatatttgaaagaaaatatttgaactccaccaaaatataaatctttaaaacaaGTATAAATGTGTCTCGGATGTGGGTTATATGTGGGTGACAGTAAGTTCTGAGACATGAATGTGATTTTGATTATGTACAAGATAGTTTATATATGTTGATGGCTTACT
>XM_034297746.1
TATGCCCCATGCACCTCCACCTGTGCGTAGGCTGTATGAATTGAGCTCAGTGTACATTTCCCCGAGTGTCAGAGGGAAGCAGGACACAATGTCGATAGAACCTGCACAGTAAGGAGGAGCTAAAGACATTATAGTGTGTACCCTCACAACTAGTAGGACAAACACCAGTAAGCGTCAACGTGCCCCAAGACAGCGAGCAGATTGCTTAGAATCGAAGATATGGGATCGGAAGATTTGCGTTTATTAACAATAATCTTAATGATCATGTGCACATCGAAGATGTGTGCGGGGCAAAACGaCATAACTGTGTCCGTTTTCACCGTCACGTCTAAAAGTATGACGGTTCTCTGGAGCGGACAGTCTGACGCGAGCTCCTTCAATGTGACCGCCACACCGAAAAACTCGCGTGAGCAGCCCGTGTTCACGCAGTTCAGCAGCAGCACGGTAATGGGCTCCGTGAACTCACTCTCCCCGAACACGGTGTACACGATGCGTGTGGAGTCTATGAACAGCTCCGTGAACGTACTCAGCAGCGCCGAGACCGAGGAGACAACGGCACCCGAGGTTCCTTCCATTGTGCAGGCCTACTCCAAACACAGCGACAGCATCACAGTGGAATTTCGCGAGGTGTCAGGTGCCACGGCATACATCCTGCGGGCAGAGAACAATGACGGATTCTTTTCAGAGAGTGTGGTGTATAGCTCGCCAGGTACCATACTCAACCTGAGGGCCTACACCAATTATACACTTAGTGTCATGTCAAGGAACAGTGGTGGCCGTAGCCAGCCCTCATGCCCAGTCTATGCCAGGACAGTGGTTGTAGCCCCAGCACTGCGCTCTGTGTCACCCACTGAGGACAGTATTGTGGTGAGCTGGGATCCCGTGGAACATGCAGTTCAGTATACACTGTGTGTCATCATGGAGGAATCAGATGCCCTGTTCAAGGTCAATACCTCCCAGACCAACATGACATTCAGCAGTCTAGATCCAGGGGTCACTTACTGCATCAAAGCCACAGCCTGGGACCCCAATAGCATCCCTGGAGATGACATTACCATCTATCAGATCACCCGTCCCCCTGTTCCTGCAGGTGTGCAGGTTTCACTGACCCTGGAGAGAATCATGGGACTAGCTGTATATTGGGAGGCTGTGCGTGGTGCAAGTCTCTACTTTGCCCTGAGCTCTATGGGGCAGAACTGTACCTCCATGGGAGACCCGTTCTGCATCATCAGCCCTATAGGATGCAGTGAGAACCACACACTCACCGTCATGGCTGAGAACCAAGCTGGCCCCAGCAGCCCATCCCAGCCAAAGGACCTGCTCACCTTCCCATGCCCTCCAGTCTCAGTGGAGGTAGATGAGCCCTCTGTAGGGAACTGCTCCGTGACATGGACCAGGGTTCCATGGGTGGAGTACTACATGGTGTACATAAACAGAGATGATGGAGCAGAGGAGCAGtgcaacaccaccaacaccatctgCTATTTCCACTGCGACTGTGGCTACACCTACATGACTACTGTATTTGTCTACAATGTGGCTGGTGCCAGCCCTCCAGGACCAATTCTCAACTACACCACTGTCCCCTGCTGTCCACAGAATGTTTATGTCTCTCTTGTTTCGACGGAGACACTGGAGGTCACATGGCCAGCAGTGCGTGGAGCAGATCTGTATGAGACTGTGGCGGCAGATGGATcagacacactgcactgcactgacACCGTGCCCATATGTGCCCTGTCTGACCTTACCTGCAACAGCCTGTACAGTGTTGTAATCAGACCCTGCGGTGAGATACGTGGCTGCAACAATACCTGCACAccaaaaacacaggaaacagccCCATGTGCTCCTGAGATCCTGAACCTCACCCAGGTGAGCAGATCTGCTGTGCAGGTATCATGGAGGGCTACCAACAAACAAGCCAACTACACAGTGAATGCTTTTGGCAGTGCCAGCACCCTTACTTGCTCATCCACCAATACTTCTTGTGGTATCACCAACCTACCTTGCGGGGATACTTATGAGGTCAGCGTATACGCCACCACCACTGTGGGGCATAGTTTGCCCAGCTATAGCATCACTATGGAAACAGGACCCTGCTGTCCCGAGACTCTCAGTGTGGAACAGGTGACACAGTCCATGACCAGTGTGAAGTGGTCATCCTCCAAGGGAGGCTGGTCTTATGTCACCTCGCTGTCATCATCACGAGGTCATGCAAAGTGCCATACCATGGACACACACTGCTTAATGGGATGCATCACATGTGGCACCAACTACAACGTCTCAGTGGAGGCCATGAGCATTACGGGACACCAGTCCTTATGCAACTATCACGGCTTTTCTTCCATTTCCTGTGTTGGCAACAGTGTTGGAATGGTTATTTATCGTGGAAAAAGGAGTGTGGATTAGCAGCTTCCATTTTAAGGGTCTCTCTGTCAATTGAGAgGCCattgagaaaatgagaaaaggagaagaaaaactTTAAAGAGTAGGaatatatacttatattatACATAGTTTcctttatactgtataccaaGGATTAATGGAATAGATtatcaaatgttaaaaattatataatttgccaTTACCCTCTTTGTGTTGGCATACCATATTtagataaatgtatttataaagtgGCAGGCAATTTAGCAGTGAACTATACTATGAATGTCTGTTCATAATTACTGTTATTGTATCTGgataaaatatttgaaagaaaatatttgaactccaccaaaatataaatctttaaaacaaGTATAAATGTGTCTCGGATGTGGGTTATATGTGGGTGACAGTAAGTTCTGAGACATGAATGTGATTTTGATTATGTACAAGATAGTTTATATATGTTGATGGCTTA

Function

NR:

description
PREDICTED: fibronectin type III domain-containing protein 7-like

GO: NA

KEGG:

id description
K24487 FNDC7; fibronectin type III domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297744.1 True 3133 mRNA 0.49 14 9829380 9861147
XM_034297745.1 False 3031 mRNA 0.49 14 9829378 9861148
XM_034297746.1 False 2869 mRNA 0.48 13 9829382 9861146

Neighbor

gene id symbol gene type direction distance location
LOC113533145 NA coding upstream 1490 9788997 ~ 9827888 (+)
LOC113533645 arhgap12,LOC108280343 coding upstream 186734 9532677 ~ 9642644 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 610277 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 666184 9033569 ~ 9163194 (+)
LOC113543050 LOC108280424 coding upstream 802120 9009201 ~ 9027258 (+)
dnaaf6 pih1d3 coding downstream 82605 9943753 ~ 9952320 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 120038 9981186 ~ 9989044 (+)
lig1 lig1 coding downstream 142508 10003656 ~ 10034015 (+)
mpz mpz,LOC106600490 coding downstream 181740 10042888 ~ 10053540 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding downstream 200078 10061226 ~ 10130722 (+)
G317529 NA non-coding upstream 9913 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 13721 9815277 ~ 9815657 (+)
G317523 NA non-coding upstream 18371 9810800 ~ 9811007 (+)
G317521 NA non-coding upstream 20207 9808847 ~ 9809171 (+)
LOC117599959 NA non-coding upstream 117478 9705920 ~ 9711900 (+)
G317618 NA non-coding downstream 13848 9874996 ~ 9875820 (+)
G317621 NA non-coding downstream 17767 9878915 ~ 9879756 (+)
G317633 NA non-coding downstream 78821 9939969 ~ 9940237 (+)
G317703 NA non-coding downstream 244618 10105766 ~ 10106921 (+)
G317754 NA non-coding downstream 296129 10157277 ~ 10157530 (+)
G317390 NA other upstream 414214 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1015968 8811595 ~ 8813410 (+)
G316745 NA other upstream 1560180 8268709 ~ 8269198 (+)
G316744 NA other upstream 1565317 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 2072417 7751694 ~ 7756961 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 97845 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 675283 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 702673 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 869198 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1538736 11399884 ~ 11464769 (+)

Expression


Co-expression Network