foxl2a (foxl2)


Basic Information

Item Value
gene id foxl2a
gene name foxl2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7553561 ~ 7554925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941284.2
gtgtgcgtgtgtgctgaGGGGGGCCGGCTTTACACGAAAAGCAGACCGCGTTTTGCCCTCCTTCTCCTGGATGATCTGTCTGAGAAGAAGCGTGAGGCAGTGAAACATTTGACCTGTGAGACGGGGATTGTGATTTCCGCTCCTCTCAGAGCCTCTGCGTGTGAGGATTCATTCAGAGCTGCTCACAGGATTAGTTCTAAACATCTGCTGGATTAAGTTTTGCTCAGTGTGAGATGATGGCCGCCTACCTGGGCCTGGAGGAGGACAGCACGGGCCTGATGGACAGCACAGGCAGCAAGGCAGAAAAAGAGCAAGCTAAGAGTGAAAGTGTGGCGGTGAAAAGCGCAGAAAAAGCCGACGCGACTCAGAAGCCGCCCTACTCGTACGTGGCGCTGATTGCCATGGCCATACGCGACAGCTCCGAGAAGCGCCTGACACTTTCAGGTATTTACCAGTACATCATCAGTAAATTTCCTTTCTACGAGAAGAATAAGAAAGGCTGGCAGAACAGCATCCGACACAACCTGTCACTGAACGAGTGCTTCATCAAGGTTCCCCGGGAGGGCGGTGGAGAAAGGAAAGGTAACTACTGGACCCTGGACCCTGCGTGTGAGGACATGTTTGAAAAGGGAAACTACCGACGCCGGCGGCGCATGAAGAGGCCGTTCAGACCTCCACCGGCACACTTCCAACCCGGCAAGTCTCTTTTCGGCGGGGACACTTACAGTTACCTCTCTCCGCCTAAATATTTACAGCCTGGCTTCATGAACAACTCGTGGTCTCTGGCGCAACCTCCTGCGCCCATGCCCTACACGTCGTGCCAAATGGCGAGCGGGAACGTGAGCCCGGTGAACGTCAAAGGCTTGTCCGCGCACTCCTCATACAGCCCTTACTCTCGCATGCAAACAATGACACTGCCGGCCATCGTCAATTCGTACAACGGCATGAgtcaccaccacacacaccagcaccaTCAGCAGCTCAGTCCGGCCGCGTCTCCTCCAGTTCCCACTGGAAACGGCACCGGGCTGCAGTTCGCGTGCTCGCGGCAGCCCACAGAGcttcccatgatgcactgcCCTTACTGGGAGCACGAGGGCAAACACTCCGCACTGCACACCCGGATCGATATATAGCTGTGTCTGTATCACTGTACACCCGGACTTGTGGTTGTAGAGATGTTTTTATATGTGTCAAGGGCTGAAGATTGAAATGTCGGGATGTGCGCAAGTGCGCGTGCAGCTGACGCGGAACCAAACTCGGGAATGTCTCCGGTGTGATGAGGTTTGGATGCTGTGCTTCTTATCTCTGCTGCAGAATGGAAATGTGGATCAAAATGGTCTctcatgcatatatatatatata

Function

symbol description
foxl2 Enables cysteine-type endopeptidase regulator activity involved in apoptotic process; sequence-specific double-stranded DNA binding activity; and ubiquitin conjugating enzyme binding activity. Involved in several processes, including apoptotic DNA fragmentation; extraocular skeletal muscle development; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in Flemming body and nucleoplasm. Implicated in blepharophimosis, ptosis, and epicanthus inversus syndrome and primary ovarian insufficiency 3.

NR:

description
PREDICTED: forkhead box protein L2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09405 FOXL; forkhead box protein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941284.2 True 1365 mRNA 0.54 1 7553561 7554925

Neighbor

gene id symbol gene type direction distance location
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 48864 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 59742 7489370 ~ 7493819 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding upstream 63560 7466633 ~ 7490001 (+)
LOC113543091 NA coding upstream 99853 7442104 ~ 7453708 (+)
dscamb dscamb,dscam,LOC108280204,LOC108413375,LOC107562808,LOC107726116,LOC107561601,LOC106612992 coding upstream 159097 7259272 ~ 7394464 (+)
LOC113543252 LOC108280221 coding downstream 13196 7568121 ~ 7575380 (+)
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding downstream 48436 7603361 ~ 7612784 (+)
lrrc6 lrrc6,LOC108280282 coding downstream 304099 7859024 ~ 7881717 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 328970 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 386153 7941078 ~ 7953336 (+)
G316317 NA non-coding upstream 48157 7505079 ~ 7505404 (+)
G316288 NA non-coding upstream 120137 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 423684 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 519755 7033565 ~ 7033806 (+)
G315901 NA non-coding upstream 618384 6934949 ~ 6935177 (+)
G316339 NA non-coding downstream 10161 7565086 ~ 7568068 (+)
LOC117599993 NA non-coding downstream 93779 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 115406 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 116365 7671290 ~ 7671520 (+)
G316398 NA non-coding downstream 116647 7671572 ~ 7671859 (+)
G316001 NA other upstream 418060 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 608571 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1326321 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1651995 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 2182664 5341009 ~ 5370897 (+)
crsp7 LOC108280732 other downstream 27388 7582313 ~ 7598164 (+)
G316413 NA other downstream 140609 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 196769 7751694 ~ 7756961 (+)
G316744 NA other downstream 708414 8263339 ~ 8264061 (+)
G316745 NA other downstream 713784 8268709 ~ 8269198 (+)

Expression


Co-expression Network