LOC113543372 (LOC108280358,LOC108280278,LOC108280276,LOC108280327,LOC108280277)


Basic Information

Item Value
gene id LOC113543372
gene name LOC108280358,LOC108280278,LOC108280276,LOC108280327,LOC108280277
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6875647 ~ 6879243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941502.1
ATGGCAGACTTCAGGCAGGGTGGTATGCTGAATGTAGACAGAGATAGGTTGAAGATCTTTGTACAGACAGCAGAAAGCTGGTTTGCACATTCCTTCAGCACCCATCTTGTCACGCCATCAGGGCCAGCAGCTTTCGACAACTGTTCCAGTGTCATCACTCCACTATTAGAGAGAGTTTACCTCTCGCCTATGTATGGTCTGGAATTTACCTTAGGCTTCATCGGAAACCTACTGGTGGTCCTAGGCTATATCTTTTGCCTCCCTGCTTGGAAGTCAACAAACGTGTACCTGTTTAACCTGTCTATGTCCGACCTCATCTTTCTGTGCACTTTACCCGAGCTGTCCTACAACTACACTTACAACTTGAAGAAATTCAATCCTTCACTATGCGTGGTTAATCGCTACATCCTCAATGTGAACATGTACTCCAGCATCCTTTTCATGATGTGGGTAAGTGTGGACCGGTTCTTGTTGCTGTGTCACCCACAGCGAGAACACATCCTGTTGACTCTCAAGGCTGCATTATGCATCACCATCCTGAACTGGATCTGGGTGACCATTCAAATCGCTCCCCTCATTGTCTTCATTGTCCAGGACTTGGAGCTAAATAGTTGGACAGTGTGTCGTGATTTTGCGAGTCTGGGAGTGGCCAAAGTTACTTTGATCTATACCACAGTGCTCACCATAACTGGATATGTGCTGCCACTGCTGGCTTTGTTTCTATCATCACAAAAGTTGGTTTCTGTACTCATGAAAAGAGAAGAGATGCGTGGGACGTCATTCCAAAGGCCAGTAAGAATAGTGAGGGCTGCAGCAATCATGTTTCTGGTGCTCTACACACCCATCCATATAATGAGGATTGTGCGGCTCACATCACGTCTTCCTGAATTAAATTTGTCACGGTGCATAATAGACTACATCAACGCGGTTTACATAGTGACACGGCCAATTGCATATGCTCACAGTGTCATCAACCCTGTGTTTTACTTCCTCATGACAGACAGCTTTAAAGAAGCACTGCAAGACAAGTGGAGGCAGCTTAAAAGGATGCTAATGACCGCACCATAA

Function

GO: NA

KEGG:

id description
K10042 SUCNR1, GPR91; succinate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941502.1 True 1068 mRNA 0.46 2 6875647 6879243

Neighbor

gene id symbol gene type direction distance location
LOC113543369 LOC108280358,LOC108280278,LOC108280276,LOC108280327,LOC108280277 coding downstream 16424 6849886 ~ 6859223 (-)
LOC113543368 NA coding downstream 52361 6819384 ~ 6823286 (-)
LOC113543367 LOC108280358,LOC108280278,LOC108280276,LOC108280327,LOC108280277 coding downstream 63167 6806026 ~ 6812480 (-)
elna LOC108280653 coding downstream 159617 6652144 ~ 6716030 (-)
sept4b LOC108280779,LOC105901369,LOC108424102,LOC106612835,LOC106581048,LOC103378127 coding downstream 285230 6525261 ~ 6590417 (-)
LOC113543285 LOC108280358,LOC108280278,LOC108280327,LOC108280276,LOC108280277 coding upstream 8849 6888092 ~ 6892489 (-)
psph psph coding upstream 24893 6904136 ~ 6914066 (-)
phkg1a phkg1,phkg1a,LOC108414041,LOC107747678,LOC107677094,LOC107655811 coding upstream 35002 6914245 ~ 6929823 (-)
chchd2 chchd2,LOC107655825,LOC107574035,LOC102796965 coding upstream 51781 6931024 ~ 6934917 (-)
rinl LOC108280669,LOC107726114 coding upstream 136010 7015253 ~ 7032773 (-)
LOC113542958 NA non-coding downstream 5184 6868525 ~ 6870463 (-)
G315861 NA non-coding downstream 152417 6723013 ~ 6723230 (-)
G315721 NA non-coding downstream 401115 6474332 ~ 6474532 (-)
G315606 NA non-coding downstream 609347 6265929 ~ 6266300 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding downstream 611149 6263628 ~ 6264498 (-)
G315940 NA non-coding upstream 33241 6912484 ~ 6912806 (-)
G315942 NA non-coding upstream 58000 6937243 ~ 6939847 (-)
G315944 hnrnpl,LOC107567577 non-coding upstream 69015 6948258 ~ 6956141 (-)
G315945 NA non-coding upstream 78845 6958088 ~ 6963130 (-)
G315963 NA non-coding upstream 134152 7013395 ~ 7014476 (-)
limk1a limk1,LOC107663742 other downstream 226252 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 1653812 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 1654631 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 1655113 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 1879642 4963065 ~ 4996005 (-)
rps28 rps28 other upstream 685838 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 1597980 8477223 ~ 8488629 (-)
G317176 NA other upstream 2004406 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 2024581 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 2089961 8969204 ~ 8973275 (-)

Expression


Co-expression Network