dmbx1a (dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538)


Basic Information

Item Value
gene id dmbx1a
gene name dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19284612 ~ 19297263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946329.2
ACCACTGCGCGTCCGCAGGAGCGCGAGACtggaagaaacacacacacacacacacacacacacactgagacactttGGATGGACTGAGAAGGCTTGCAGAGATTGAAGGAAGTCCGGAAGTGGACGCGAGtacaagcaaaagaaaatattatcaGAGGTTTGACTTCTGGAGGTTCCAGGATACTTTGCGCGTTTTTTTCATTTCTCggctcagaaacacacagagACGTCACACGCCATGCAGCACTACGGCGTGAACGGGTATTCCCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTCCATCAGCAGGCGGCTCAACAGGCCCAACACGCACCCGACTACCGGCCATCCGTACACGCACTCACACTCGCTGAGAGGCTGGCTGACATTATACTCGAGGCTCGTTACGGCTCTCAGCATCGTAAGCAGCGGCGGAGTCGCACGGCCTTCACCGCGCAGCAGCTTGAGGCTCTGGAGAAAACGTTTCAGAAAACACACTACCCGGATGTGGTGATGCGTGAACGGCTGGCCATGTGCACCAACCTGCCCGAGGCGCGAGTCCAGGTGTGGTTCAAGAACCGGCGGGCGAAGTTTCGTAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAGCAGAAGGATGCCTCACCTGAAGGAACATTAGGAGCAAGCGATAAGACCGACGCTCCCTCCACTGTAAACCTGGAGAACCCGCTTCCTCCTTCGTCCacgtcctcttcctcctccatcgAGGCTGAGGGGCCATCGGAGCTGAGCGTGGAGCTAAACGTCACCTCAGCGGAGCAGTCAGGGAGCGAGTCGGCCACAGAGGACAACACAACCGACAGGGAAGAAGAGATAAAGCTTCACCAGGATGACATGAAGGTGGACAAGTCTGGGAGTCTTTCTCCTCCCTGTAAACGCCTCAGCCCCAAACCAGAATCTCCCCTCGGCTCACCGGTGATCACATCCGGGGCTAACGGCGTGACTGGAGGCATCTCTCAGAGCCATTCATACTCATCATCACCGCTGAGCCTCTTCCGTCTACAGGAGCAGTTCCGCCAGCACATGGCTGCTACTAACAGCTTGGTGCACTACCCATCGTTCGACATGGCCGCCCCGTCCTCCTTGCCCTACCTGGGCATGAACGTGAGCGTCCCAGCACCGCTGGGTTCACTGCCCTGCCAGTCGTATTACCAGTCTCTGTCCCAGCACGCGCAGCAGGTGTGGAGCGGTCCTCTGCTGCAGGCCTCCGCTGCGCTGCCCGGCCACAACAGCAAGACAAGCAGCATCGAGAACCTGCGGCTACGCGCCAAGCAACACGCTGCCTCTCTCGGCCTCGACACCATGCCCAACTAAACACTAACTGCGACAAAACAGGACACGCTCGGCTGAATGAATCCCCCTAGCTACCACCTGGATCCGCAAAGACACTTCACAAAATCTATGTAAAGAAATGTAATGTCATTTCTgagcaacttttttttcctccaagtattttttatttaagtttttgtcatcagtgaaaagtaaaaaattctGCAGCGGTTTTCGAATTgagaaaaatgcatttactCTATTTTCTGGACTAGAAGTTGCACCTTAGTATAAGACACACCACTCTAAATAAAGTCTgctaaaaacaataaatttatACACAATGTTTTATAGGATGCTGTATGGATAGCATTTTActtacacatttatttgtagTTGTTTTAGAAATAAGCAAACAACATAAGGCTAATAGCAAAATTCTCACACGCATCATTTCACTGTATATGTAAGCAAAAAAAGTGCCTTATATTCCAGAAAATAAGGTAAATgtgattcattttcagtagGTTTCATTGAACgtattaagaaaatgaaacacaatCAGCCTGTGTGCAGGTTGAAAATGTCcaacaaaaaattaatgctaatgctactttttttttttttataacacacTTACCTTTCTTCCCATTTGTACAGGTACGCGTTACAGTAAACCTGCTTAATTGTAGCACTTTTTCCAGAAAAGCTTCGTGCTCTGCATGCACTGAGGCCGTTCTAATTCAATTAGTCAAGTGCTCaaattacacattacataatTCTGTACGTAACGTGTAAATCCCTGCCTTGTAATACCAGATTGCTTAATTAAACCTGACTAATTCACCTGTTTTATGGCCAGCATTTAAACCATGTTAAACTGCAAATGGCCGgataattagaaaataatatcACTGACTCCATATGCAAAgcttttaattacatttagcCTTGAGGAAGAAATGCAATTACAGTCCATGCATATCATTTCAGATCGCTGTATATCTAACGCTCCGAGGGGAAAATAATTGCAATGAACAGAAAattcaagcctttttttttccccagtgcaTGTTAGCAAGGTGGTGCGATTAGCCGAGACGGTggatataaattaataaataaaaacgctctgattttttttattgctgtgttAAAGTGACATAATTTAATACACcgaatatttgttttattttttttccatttggggaaaaaaaaaatttgaaaaaagaaagctCCAAGCACTTCCATACACAGGAAGTCCATATGGAAAGCACTTCCTCCTCTCGCCGTGTCTGTAAACTGTTTTACTCTGTAAATTACACAAAGTCTTTTATCTATAAATGTTTACTGGTAAGgcaaatgtaaaaagttttaTGTTTTAGATTGAGAAGGACGCGTCCAGCCTCCCGTGATGATCCTCGTAGCTGTCCGTTGTTGAGATTTGTACGAGGTGGACGCTAGTCCTGCGTCAGATATTTAACCTTTAACAGTCTGGtcgtatatatatctatctatgtaACTCCTCCAGTTGGTTTTCATTGTTGCTGTGCTCATAAAGTTTTACTCGCTTGCACTGTTTCCATCACAGTAAAGTGGTGAACTCGTAGTGTACACTGGTGCCGGGTAAgaacaaatatatacattatacgTTTTTCTCTATTACAACTGTAGGCTTGAGAACTTGTAAAATAA
>XM_034314617.1
ACCACTGCGCGTCCGCAGGAGCGCGAGACtggaagaaacacacacacacacacacacacacacactgagacactttGGATGGACTGAGAAGGCTTGCAGAGATTGAAGGAAGTCCGGAAGTGGACGCGAGtacaagcaaaagaaaatattatcaGAGGTTTGACTTCTGGAGGTTCCAGGATACTTTGCGCGTTTTTTTCATTTCTCggctcagaaacacacagagACGTCACACGCCATGCAGCACTACGGCGTGAACGGGTATTCCCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTCCATCAGCAGGCGGCTCAACAGGCCCAACACGCACCCGACTACCGGCCATCCGTACACGCACTCACACTCGCTGAGAGGCTGGCTGGCTGCGCATTTCAAGACATTATACTCGAGGCTCGTTACGGCTCTCAGCATCGTAAGCAGCGGCGGAGTCGCACGGCCTTCACCGCGCAGCAGCTTGAGGCTCTGGAGAAAACGTTTCAGAAAACACACTACCCGGATGTGGTGATGCGTGAACGGCTGGCCATGTGCACCAACCTGCCCGAGGCGCGAGTCCAGGTGTGGTTCAAGAACCGGCGGGCGAAGTTTCGTAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAGCAGAAGGATGCCTCACCTGAAGGAACATTAGGAGCAAGCGATAAGACCGACGCTCCCTCCACTGTAAACCTGGAGAACCCGCTTCCTCCTTCGTCCacgtcctcttcctcctccatcgAGGCTGAGGGGCCATCGGAGCTGAGCGTGGAGCTAAACGTCACCTCAGCGGAGCAGTCAGGGAGCGAGTCGGCCACAGAGGACAACACAACCGACAGGGAAGAAGAGATAAAGCTTCACCAGGATGACATGAAGGTGGACAAGTCTGGGAGTCTTTCTCCTCCCTGTAAACGCCTCAGCCCCAAACCAGAATCTCCCCTCGGCTCACCGGTGATCACATCCGGGGCTAACGGCGTGACTGGAGGCATCTCTCAGAGCCATTCATACTCATCATCACCGCTGAGCCTCTTCCGTCTACAGGAGCAGTTCCGCCAGCACATGGCTGCTACTAACAGCTTGGTGCACTACCCATCGTTCGACATGGCCGCCCCGTCCTCCTTGCCCTACCTGGGCATGAACGTGAGCGTCCCAGCACCGCTGGGTTCACTGCCCTGCCAGTCGTATTACCAGTCTCTGTCCCAGCACGCGCAGCAGGTGTGGAGCGGTCCTCTGCTGCAGGCCTCCGCTGCGCTGCCCGGCCACAACAGCAAGACAAGCAGCATCGAGAACCTGCGGCTACGCGCCAAGCAACACGCTGCCTCTCTCGGCCTCGACACCATGCCCAACTAAACACTAACTGCGACAAAACAGGACACGCTCGGCTGAATGAATCCCCCTAGCTACCACCTGGATCCGCAAAGACACTTCACAAAATCTATGTAAAGAAATGTAATGTCATTTCTgagcaacttttttttcctccaagtattttttatttaagtttttgtcatcagtgaaaagtaaaaaattctGCAGCGGTTTTCGAATTgagaaaaatgcatttactCTATTTTCTGGACTAGAAGTTGCACCTTAGTATAAGACACACCACTCTAAATAAAGTCTgctaaaaacaataaatttatACACAATGTTTTATAGGATGCTGTATGGATAGCATTTTActtacacatttatttgtagTTGTTTTAGAAATAAGCAAACAACATAAGGCTAATAGCAAAATTCTCACACGCATCATTTCACTGTATATGTAAGCAAAAAAAGTGCCTTATATTCCAGAAAATAAGGTAAATgtgattcattttcagtagGTTTCATTGAACgtattaagaaaatgaaacacaatCAGCCTGTGTGCAGGTTGAAAATGTCcaacaaaaaattaatgctaatgctactttttttttttttataacacacTTACCTTTCTTCCCATTTGTACAGGTACGCGTTACAGTAAACCTGCTTAATTGTAGCACTTTTTCCAGAAAAGCTTCGTGCTCTGCATGCACTGAGGCCGTTCTAATTCAATTAGTCAAGTGCTCaaattacacattacataatTCTGTACGTAACGTGTAAATCCCTGCCTTGTAATACCAGATTGCTTAATTAAACCTGACTAATTCACCTGTTTTATGGCCAGCATTTAAACCATGTTAAACTGCAAATGGCCGgataattagaaaataatatcACTGACTCCATATGCAAAgcttttaattacatttagcCTTGAGGAAGAAATGCAATTACAGTCCATGCATATCATTTCAGATCGCTGTATATCTAACGCTCCGAGGGGAAAATAATTGCAATGAACAGAAAattcaagcctttttttttccccagtgcaTGTTAGCAAGGTGGTGCGATTAGCCGAGACGGTggatataaattaataaataaaaacgctctgattttttttattgctgtgttAAAGTGACATAATTTAATACACcgaatatttgttttattttttttccatttggggaaaaaaaaaatttgaaaaaagaaagctCCAAGCACTTCCATACACAGGAAGTCCATATGGAAAGCACTTCCTCCTCTCGCCGTGTCTGTAAACTGTTTTACTCTGTAAATTACACAAAGTCTTTTATCTATAAATGTTTACTGGTAAGgcaaatgtaaaaagttttaTGTTTTAGATTGAGAAGGACGCGTCCAGCCTCCCGTGATGATCCTCGTAGCTGTCCGTTGTTGAGATTTGTACGAGGTGGACGCTAGTCCTGCGTCAGATATTTAACCTTTAACAGTCTGGtcgtatatatatctatctatgtaACTCCTCCAGTTGGTTTTCATTGTTGCTGTGCTCATAAAGTTTTACTCGCTTGCACTGTTTCCATCACAGTAAAGTGGTGAACTCGTAGTGTACACTGGTGCCGGGTAAgaacaaatatatacattatacgTTTTTCTCTATTACAACTGTAGGCTTGAGAACTTGTAAAATAA

Function

symbol description
dmbx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in brain development; eye development; and negative regulation of transcription, DNA-templated. Acts upstream of or within several processes, including nervous system development; regulation of neural retina development; and retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; anterior neural rod; immature eye; nervous system; and presumptive diencephalon. Orthologous to human DMBX1 (diencephalon/mesencephalon homeobox 1).
dmbx1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in brain development; developmental growth; and regulation of transcription, DNA-templated. Predicted to act upstream of or within adult feeding behavior; adult locomotory behavior; and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24893 DMBX1; diencephalon/mesencephalon homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946329.2 False 3022 mRNA 0.45 5 19284612 19297263
XM_034314617.1 True 3037 mRNA 0.45 5 19284612 19297263

Neighbor

gene id symbol gene type direction distance location
wls wls coding upstream 96980 19163675 ~ 19187632 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding upstream 124469 19143608 ~ 19160143 (+)
ccdc18 ccdc18 coding upstream 147831 19110288 ~ 19136781 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 178463 19094922 ~ 19106149 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding upstream 206746 19073707 ~ 19077866 (+)
ptger4c LOC108280834 coding downstream 59149 19356412 ~ 19361261 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding downstream 760324 20057587 ~ 20062476 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding downstream 841681 20138944 ~ 20150410 (+)
cc2d1b LOC108280309,LOC107553237 coding downstream 860055 20157318 ~ 20180634 (+)
zgc:110269 LOC108280318 coding downstream 1172262 20469525 ~ 20476964 (+)
G322957 NA non-coding upstream 175278 19107386 ~ 19109334 (+)
G322817 mrpl37 non-coding upstream 289989 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 325293 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 469795 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 471764 18812503 ~ 18812848 (+)
G323104 NA non-coding downstream 136967 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 215461 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 285054 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 346560 19643823 ~ 19644570 (+)
G323249 NA non-coding downstream 363353 19660616 ~ 19661232 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 64383 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 299530 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 413252 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 854590 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 1057379 18225921 ~ 18227233 (+)
LOC113546339 NA other downstream 16597 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 831990 20129253 ~ 20281067 (+)
G323534 NA other downstream 1141439 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1340321 20637584 ~ 20663819 (+)
G323615 NA other downstream 1723926 21021189 ~ 21157280 (+)

Expression


Co-expression Network