rpl5a (rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486)


Basic Information

Item Value
gene id rpl5a
gene name rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19073707 ~ 19077866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946360.2
ACTCGCTGCTTCCGGTCTGTTTTTTCTACTTCCGGTTGCCGGTTGCCTGCCTCTTCCTTTTCCTCAGTGCAGCGGGAGCAGTATCGGAGTCTGAAGACTTCATCTCCTGATTAAAGGAGAAAATAACGATTAAAAATGggTTTTGTCAAGGTGGTGAAGAGCAAGGCGTATTTCAAGAGATACCAGGTCAAGttcaggaggaggagagAGGGGAAGACGGACTACTTTGCCCGCAAACGCCTCGTCATCCAGGATAAGAACAAGTACAACACGCCTAAGTACAGGATGATCGTTAGATTCTCCAACAGGGATATTGTTTGCCAGATCGCATATGCCAAAATTGAAGGCGACGCGATCGTCTGCGCTGCTTACTCTCACGAGTTGCCGAGATACGGCGTTTCTGTGGGGCTGACCAACTACGCCGCTGCCTACTGCACAGGACTGCTGCTGGCACGTCGGCTGCTGAATAAGTTTGGTCTGGATAAGGTGTACGAGGGCCAGGTGGAGGTGACGGGTGAGGAGTTCAACGTGGAGAGCATCGACGGCCAGCCGGGAGCGTTTACCTGCTACCTGGACGCCGGTCTCACCAGAACCACCACCGGGAATAAAGTATTCGGAGCCCTGAAAGGAGCAGTGGATGGAGGACTGTCCATCCCACACAGCACTAAGCGGTTCCCGGGCTACGACTCGGAGAGCAAAGAGTTCAACGCCGAGGTTCACAGGAAGCACATCCTGGGCCTGAACGTGTCCGAGTACATGAGCAGCCTGATGGAGGAGGACGAGGAAGCCTACAAGAAACAGTTCTCCCGCTTCATCAAGAACGGCGTCACACCTGATTCGgtggAGGAAATGTACAAGAAGGCTCACGCTGCTATTCGTGAGAACCCGGTACACGAGAAGAAGCCCAAGAGGGAGGTGAAGAAGAAGAGGTGGAACCGTAAGAAACTGACTCTGGGCCAGAGGAAGGACCGCGTTGCCCAGAAGAAGGCCAGCTTCCTCCGAGCTCAGGAGGCCGCCGCCGAAGCCGAATAAACACACGGACCTTCTCACACTGCTCCAAAGAAAATGTGTGCACCTTTCTCCAAATAAAAGATTTGGGAAAAGTAA

Function

symbol description
rpl5 Enables RNA binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. A structural constituent of ribosome. Involved in several processes, including protein stabilization; regulation of cellular protein metabolic process; and ribosome biogenesis. Located in cytosolic ribosome; endoplasmic reticulum; and nuclear lumen. Part of ribonucleoprotein complex. Implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946360.2 True 1107 mRNA 0.53 8 19073707 19077866

Neighbor

gene id symbol gene type direction distance location
rpap2 rpap2 coding upstream 31077 19027881 ~ 19042630 (+)
cdc7 cdc7,LOC102782901 coding upstream 59514 19006527 ~ 19014193 (+)
cdcp2 cdcp2 coding upstream 71500 18995557 ~ 19002207 (+)
fam151a fam151a coding upstream 136917 18931059 ~ 18936790 (+)
cryz cryz coding upstream 148134 18919067 ~ 18925573 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 17056 19094922 ~ 19106149 (+)
ccdc18 ccdc18 coding downstream 32422 19110288 ~ 19136781 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding downstream 65742 19143608 ~ 19160143 (+)
wls wls coding downstream 85809 19163675 ~ 19187632 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding downstream 206746 19284612 ~ 19297263 (+)
G322817 mrpl37 non-coding upstream 79084 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 114388 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 258890 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 260859 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 261372 18811105 ~ 18812335 (+)
G322957 NA non-coding downstream 29520 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 356364 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 434858 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 504451 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 565957 19643823 ~ 19644570 (+)
ssbp3a ssbp3,ssbp3a other upstream 88625 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 202347 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 643685 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 846474 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1407494 17589072 ~ 17666213 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 126792 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 235994 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1051387 20129253 ~ 20281067 (+)
G323534 NA other downstream 1360836 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1559718 20637584 ~ 20663819 (+)

Expression


Co-expression Network