G322957


Basic Information

Item Value
gene id G322957
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19107386 ~ 19109334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382465
TGGACGAGGAAGACTGTATGAGAGAACAGCTTTCAGTTCAATagggcacttttttttttctttaaaatatacattttatctaAATTTCACTCAACTTTGATTGCACATTAGTTCATCATCCTGTTTATCAGGTTACATTTAGACAGAAATTCTCCAAGTgcaaattatttgttttaagGTATTAACAGCATTAATTTTGGGGCGGGGTTTTAGATCGAGGGATTGGTTACTgagatctgtttttttctctctctctctctctctctctctctctctctctctctctcttttatttctgagattttttttttcacgtttgTTATTTTCACACGTAGACTAGGAAACCTCAGACAAAGCTCCTTCACGTTGCATACGGAGTTGTTATGTTACGCTTAAGCgaaattttgttcatttcatcaTCCACACAAGAACTGTCAAAGgtcTCGGTGCTATTTATTGCTtcggtgaaaaaaaaaaacaaaaaaaactgtacactAACGAGATGTTGGAGTTCAGTTCCCGTCAGGATGATTTATACTTCACTGTAAGAGCAGATGAGAGAATGTTCATGTCTGCGTTCGTCGCCTCTACGCATGTCCTGATTTTCCCATCACGGTGTACGTGGGAcgtgttaaaggaaaactccaccctgaacgaCCTGCGTGTTAATCTGTAAAATTAACACCTGAGCTTCAACAGCATCCGAGATTTGTTCTGTACTGAAACCCTGAGACTTTCTTTCATGGACATGTTGGTTCATTTTCactttcctacattacccacaatgccgtgctGATTGCGGCGCAGTGGGATTTTGCTCTCGCTTCATCTCTAGTTAAgggagagcgatgcagcggcgctttagtctgtccagctctctgaCTTTCCTCTTCTGTACACTCAGCTTCCAAAGCCTCAACTTTCACGCTAACACCGCCGCCAACGCCGTCGCTAACTAACCAAGTCGAGTCAGAGTTCTGCGATGAATTCTGGGACTTCTgagtctccactacttctacgcTATTAATGATGTTGCTTGTTAATAAGATGAGAGTAAAGAAGCGCTCGCTCTTTTGATTTTAGGAGcgaacagcaaaacctgaccgTTATCTCCGTGTTCGAGTTCGTCGAAATGTTTTTCTAACTTTAAACATCATcgtaactgcgctagcaataacAACAACGTGACATCAGAGCGACACACAACCTCtgtcttctcacagaaataacCATCATACAACAACCAACAAAGCAGCAGCAgaatcactaaacccatcacaaATATTACAATAGAAACATATTGAGTGTGTTCCAGCgtggagtttttctttaataaatgtggCACAATCCGGAGGAATCCTGTAGCGCAGGGGGGAGGAGCGCTATTTATTCGGCACATGCCTGTTCAGTTTCTCGTGTAGCATTAATTGCTGAATTTCTGAGACGTTGTTTTGTTCAGTTCAgactgtatttttgtttctatagtgaATGCCCTgcgttttaaaaaataaagtgttattgACCCACTCATCTCTGAATGAGCGCTGACTGTATCGGCGCAGGTTTCTGCTCTAAGGCAAGGGTTTCTTTCGATCTCAACACTGATACCTCttttatttcagtataaaatgtgtatgaaatgtTTCTTACTTGCTGTACCAGTACTACATCCATG

Function

GO:

id name namespace
GO:0032044 DSIF complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382465 True 1675 lncRNA 0.41 2 19107386 19109334

Neighbor

gene id symbol gene type direction distance location
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 1237 19094922 ~ 19106149 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding upstream 29520 19073707 ~ 19077866 (+)
rpap2 rpap2 coding upstream 64756 19027881 ~ 19042630 (+)
cdc7 cdc7,LOC102782901 coding upstream 93193 19006527 ~ 19014193 (+)
cdcp2 cdcp2 coding upstream 105179 18995557 ~ 19002207 (+)
ccdc18 ccdc18 coding downstream 954 19110288 ~ 19136781 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding downstream 34274 19143608 ~ 19160143 (+)
wls wls coding downstream 54341 19163675 ~ 19187632 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding downstream 175278 19284612 ~ 19297263 (+)
ptger4c LOC108280834 coding downstream 247078 19356412 ~ 19361261 (+)
G322817 mrpl37 non-coding upstream 112763 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 148067 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 292569 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 294538 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 295051 18811105 ~ 18812335 (+)
G323104 NA non-coding downstream 324896 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 403390 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 472983 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 534489 19643823 ~ 19644570 (+)
G323249 NA non-coding downstream 551282 19660616 ~ 19661232 (+)
ssbp3a ssbp3,ssbp3a other upstream 122304 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 236026 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 677364 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 880153 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1441173 17589072 ~ 17666213 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 95324 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 204526 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1019919 20129253 ~ 20281067 (+)
G323534 NA other downstream 1329368 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1528250 20637584 ~ 20663819 (+)

Expression


Co-expression Network