cap2 (cap2)


Basic Information

Item Value
gene id cap2
gene name cap2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14128893 ~ 14158705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929891.2
TACGTAATTGGGCCACAGGGAGGCTGGGAGCTGCAGCGCTATTCGGACAGGAGCCGAATGAGAGACTCGGGAACAGCCAATTTAAAGGAAAGCgtggagatttaaaaaaaaacagacagccTCCTGCCAAAGGCTTCACTCGCTATGGAAGCACTAGTTGAGCGACTGGAACAGGCTGTGATTCGGCTCGAGACCGTTTCAGCCAAGCTTCAGGGTGGCGCTGGGAACTTGTCCAATGGCGAGATCAACGGATTTAATGGTGAATCCCAGTGCATGGCTGCATTTGACCATTTACTGAGAGGCCCTCTGTCTGAATACTTGAAGAACAGCCGGACTATTGGAGGAGATGTGGCAAAACATGCTGAGATGGTACACAATGCCCTGCAGGTACAGAAGACTTTCCTCAAATTGGCCGCCACACACCAGGAGCCTGCACAGACAGAGCTGGCAGACCTCCTCAGGCCCATCTCAGAGCAGATCGAGCAGATCCAGACTTTCAGAGAGAAGAACCGTGGCAGTCGTCTGTTTAACCACCTGTCTGCTGTCAGCGAGAGCATTCCTGCCCTGGGATGGGTGGCAGTGAATCAGAAACCAGGGCCCTACGTGAAGGAGATGAACGATGCCGCTATGTTCTACACCAACAGAGTCCTGAAAGACTACAAGGACACTGACCCTTGCCATGTGGAGTGGGTTCGCTCCTACCTGAGTATCTGGACTGAACTGCAGGCGTTTATTAAACAGCACCACACCACTGGACTCGTCTGGAGCAAGACTGGTCCTGTAGCTCCTTCATCCATACTCATGGCTGAACCTGCTACTCCCTgccctccacctccaccacctcctccacctgcaTTCACAGACGAAGGTCCAAAGCCTGACAACAGTGCGGCTCAGCGTTCAGCTCTGTTCGCCCAGCTCAACCAGGGAGAGGCCATTACTAAAGGATTGAAGCATGTGGGTGATGAGCAGAAGACCCATAAGAACACCGCTCTTCGCTCTCAGGGTGGAACAAGCCAGGCTTCTCCTTCAAAAGGCAGAGCTCCCAGCAGCTCTACTCCGACACCAGCTAAGAAAAGATCTCCCGTCTTGGAACTGGAGGGGAAGAAGTGGAGGGTGGAGTACCAGGAACAGGTGCATGATCTGGTAATAGAAGAAACAGAGCTGAAACAGGTGGTCTATATCTTTAGCTGCAACAACTCCACACTTCAGATTAAAGGCAAAGTCAACTCCATCATAGTGGACAACTGCAGGAAGCTTGGCATTGTGTTTGAGAATGTGGTTGGCATTTTTGAAATCATCAACTCCAGAGACATCCAGCTCCAGGTGTTGGGAAAAGTGCCCACCATTTCCATCAATAAGACAGAGGGATGCCACATCTACTTGAGTAAGGAGTCTCTCAACTGTGAGATTATCAGTGCCAAGGGCTCAGAAATGAACATTCTGGTTCCTCAGGAAGATGACGATTATAGAGAGTTTCCTGTGCCGGAGCAGTTTAAGACCGTTTGGGACGGGTCCAAGCTGGTGACAGAGCCGACTGAGATTGCTGGCTGATTGACAGATTCATTTTCCTTTCCACATCTCTGCTGATAGCCCCATTACCCGTAGCTCTCACTGCACTCTCAGCACACAACATTTTAGACAGATTCATCTTATACCTGAATTATTGTTAGTGACAATTCTCCATTAAAAAGGCTATTTAGTGTAAGAATAGAACTAATCTAGTCCACATACTAGAAATTCAATCAAATTTATGATGAAGGTTCAGATTTAAccacaataataaacaatagcTGTATTGTTttacctttttctttcttttccttttaccAATTTCAAGATTCTGTAAttctaaatttaattaaatctacCCTAGTTCAGTACATCTTCCCAGTCTAAAAGTCAAGATCTATTCAGATTATTCTAGAAATACAATCCCTGGtgataatgaagaaaaactatttgtTCTAAGGCACTTTTGAATCTCATGCATCAGTCCTGTCCAATTTGTGTCTTTCTGTTACATGTATTTTGAAACCCGTTTTCTGTTTTAATAAGAAGTTTGAGATTTTAAATCATGATTTAGCAAGACTTCAGGCATTTTTAGACTGAGATTAGGActagatctaaaaaaaaaaagaagcagactGAATATACACTTCGAGACTACTTGGTGAATGTGAGAAACTGGCACTTGGTGTGCAAACAAATGTGTGCCTCAaggatgacttttttttatatatctttttttttaatttagcaatTTTGTTATGTATAATCTACCatgtattgtgtttatttttaggcATCAGCCAGCACAGTGTTTCATACAATGGTATACTGTGTAATGTACAGTCAACCTGTGCCATCATAGTCATACACTGAAACAACCATGTCATAAAGAAACActacataatataaatatagaatataagAAAACTCA
>XM_034298345.1
tgtgtgtggttgggtgGGTGCCTGCCTGTGTGTAGCGCATAAGAAGACCTTGCATAAAATGCTGAGATGGTACACAATGCCCTGCAGGTACAGAAGACTTTCCTCAAATTGGCCGCCACACACCAGGAGCCTGCACAGACAGAGCTGGCAGACCTCCTCAGGCCCATCTCAGAGCAGATCGAGCAGATCCAGACTTTCAGAGAGAAGAACCGTGGCAGTCGTCTGTTTAACCACCTGTCTGCTGTCAGCGAGAGCATTCCTGCCCTGGGATGGGTGGCAGTGAATCAGAAACCAGGGCCCTACGTGAAGGAGATGAACGATGCCGCTATGTTCTACACCAACAGAGTCCTGAAAGACTACAAGGACACTGACCCTTGCCATGTGGAGTGGGTTCGCTCCTACCTGAGTATCTGGACTGAACTGCAGGCGTTTATTAAACAGCACCACACCACTGGACTCGTCTGGAGCAAGACTGGTCCTGTAGCTCCTTCATCCATACTCATGGCTGAACCTGCTACTCCCTgccctccacctccaccacctcctccacctgcaTTCACAGACGAAGGTCCAAAGCCTGACAACAGTGCGGCTCAGCGTTCAGCTCTGTTCGCCCAGCTCAACCAGGGAGAGGCCATTACTAAAGGATTGAAGCATGTGGGTGATGAGCAGAAGACCCATAAGAACACCGCTCTTCGCTCTCAGGGTGGAACAAGCCAGGCTTCTCCTTCAAAAGGCAGAGCTCCCAGCAGCTCTACTCCGACACCAGCTAAGAAAAGATCTCCCGTCTTGGAACTGGAGGGGAAGAAGTGGAGGGTGGAGTACCAGGAACAGGTGCATGATCTGGTAATAGAAGAAACAGAGCTGAAACAGGTGGTCTATATCTTTAGCTGCAACAACTCCACACTTCAGATTAAAGGCAAAGTCAACTCCATCATAGTGGACAACTGCAGGAAGCTTGGCATTGTGTTTGAGAATGTGGTTGGCATTTTTGAAATCATCAACTCCAGAGACATCCAGCTCCAGGTGTTGGGAAAAGTGCCCACCATTTCCATCAATAAGACAGAGGGATGCCACATCTACTTGAGTAAGGAGTCTCTCAACTGTGAGATTATCAGTGCCAAGGGCTCAGAAATGAACATTCTGGTTCCTCAGGAAGATGACGATTATAGAGAGTTTCCTGTGCCGGAGCAGTTTAAGACCGTTTGGGACGGGTCCAAGCTGGTGACAGAGCCGACTGAGATTGCTGGCTGATTGACAGATTCATTTTCCTTTCCACATCTCTGCTGATAGCCCCATTACCCGTAGCTCTCACTGCACTCTCAGCACACAACATTTTAGACAGATTCATCTTATACCTGAATTATTGTTAGTGACAATTCTCCATTAAAAAGGCTATTTAGTGTAAGAATAGAACTAATCTAGTCCACATACTAGAAATTCAATCAAATTTATGATGAAGGTTCAGATTTAAccacaataataaacaatagcTGTATTGTTttacctttttctttcttttccttttaccAATTTCAAGATTCTGTAAttctaaatttaattaaatctacCCTAGTTCAGTACATCTTCCCAGTCTAAAAGTCAAGATCTATTCAGATTATTCTAGAAATACAATCCCTGGtgataatgaagaaaaactatttgtTCTAAGGCACTTTTGAATCTCATGCATCAGTCCTGTCCAATTTGTGTCTTTCTGTTACATGTATTTTGAAACCCGTTTTCTGTTTTAATAAGAAGTTTGAGATTTTAAATCATGATTTAGCAAGACTTCAGGCATTTTTAGACTGAGATTAGGActagatctaaaaaaaaaaagaagcagactGAATATACACTTCGAGACTACTTGGTGAATGTGAGAAACTGGCACTTGGTGTGCAAACAAATGTGTGCCTCAaggatgacttttttttatatatctttttttttaatttagcaatTTTGTTATGTATAATCTACCatgtattgtgtttatttttaggcATCAGCCAGCACAGTGTTTCATACAATGGTATACTGTGTAATGTACAGTCAACCTGTGCCATCATAGTCATACACTGAAACAACCATGTCATAAAGAAACActacataatataaatatagaatataagAAAACTCAGTTGCTCAGCTcactgcagattttttttttctttatgataTCATCTGCATATTGTAACCACTCTATTTTGCTGTGTGAAGTACAATATTTAAGATTTC

Function

symbol description
cap2 Predicted to enable actin binding activity and adenylate cyclase binding activity. Predicted to be involved in cAMP-mediated signaling; cell morphogenesis; and regulation of adenylate cyclase activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; heart; male organism; muscle; and neural tube. Orthologous to human CAP2 (cyclase associated actin cytoskeleton regulatory protein 2).

NR:

description
adenylyl cyclase-associated protein 2 isoform X2

GO: NA

KEGG:

id description
K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929891.2 True 2443 mRNA 0.44 13 14128893 14158607
XM_034298345.1 False 2241 mRNA 0.43 11 14137211 14158705

Neighbor

gene id symbol gene type direction distance location
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding upstream 7295 14111423 ~ 14121598 (+)
stmnd1 stmnd1 coding upstream 20457 14101369 ~ 14108436 (+)
utp23 utp23,LOC102791607 coding upstream 100912 14024374 ~ 14027981 (+)
lrrc14b lrrc14b coding upstream 998504 13126153 ~ 13130389 (+)
LOC113535917 LOC108256774 coding upstream 1003614 13115196 ~ 13125279 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding downstream 7194 14165899 ~ 14170688 (+)
mapk15 mapk15 coding downstream 13082 14171787 ~ 14183687 (+)
grinaa grina,LOC102211845,LOC101487737,LOC107654720,LOC107706230 coding downstream 27346 14186051 ~ 14202604 (+)
LOC113535912 tpmt coding downstream 536472 14695177 ~ 14701786 (+)
LOC113535988 ext1,ext1c,LOC107706241,LOC107654729,LOC107592945,LOC107688378 coding downstream 545039 14703744 ~ 14754416 (+)
G343671 NA non-coding upstream 50352 14076457 ~ 14078541 (+)
G343620 NA non-coding upstream 134574 13969234 ~ 13994319 (+)
G343522 NA non-coding upstream 362292 13763084 ~ 13766601 (+)
G342836 NA non-coding upstream 827090 13301539 ~ 13301803 (+)
G342735 NA non-coding upstream 981047 13147045 ~ 13147846 (+)
G343690 NA non-coding downstream 1132 14159837 ~ 14161453 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding downstream 169489 14328194 ~ 14329982 (+)
G343841 NA non-coding downstream 386894 14545599 ~ 14545807 (+)
G343846 NA non-coding downstream 463801 14622506 ~ 14622728 (+)
G343847 NA non-coding downstream 466858 14625563 ~ 14625822 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 1047664 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1174168 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1336420 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 1433381 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 2313620 11810109 ~ 11815273 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 47016 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 74812 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 1200088 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 1275417 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2558766 16717471 ~ 16732200 (+)

Expression


Co-expression Network