G343690


Basic Information

Item Value
gene id G343690
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14159837 ~ 14161453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407118
AGTTGCGCATCAATAGCAGAGAATAAACAATAAACCAACATACATTAATGCAGAAAATTACAATACAGAAATAATATAATTggaccaaaaaataaaaagatcagATATGCTTCTTCAATTTTCCTCCTCATACTGAATAATAAGTTTTTCAAGTATCTTGAATCTTATGACATTTCCAAATGTTAAACATGGCACTTTGCTAcagtattcatttttaatggatGTTTGTAATATGCAACTAGTTCACTACTGATACCTGTGACAAACATTTGCTGTAAAGAAAAGTTAAATTTACAATGGTATTATACAGGACTGTTGTTCAGGGGTCCAATCACCACCACATATcaccacatatacagtataccaaTATACATAGAGTGCACaacttctttaataaaaattctttaaacatttttcaaaatggctgaaaagTAAAGCTTTATCCTACACCACATTtggtgtttaatgtttaatgacgATATTTCCCTGAGAGTCCTGCGTGAAAAGCATCTCTGCCTCTGGATCTGAGTTCTCTGTTTCCAGAGGTGTTACAGACGGGATGCTCAAATACTCTCTGCCCTCAAGGGAATTAGTTTGATCCTTCAGTGGGCATCTAGACTGTTTACTGCGATGGGCGATCACCCGAAAGCCTTCAGAATCCTGAGTGAACAACATGCTGAATGAGTCTTCATCATTCTCCTGAGCCTCCCTGATTGACGTCTTAGGGGTCTGACAAAATTTCCTGTTAAAATCTGAAGAACGTTTTGCAGGGCTGGAACACATGGTACTATGTCTCAGTGATGTGGGTCTGCTGTTTTCTTTATCCTCTCTCTTCACAGGTGACCACTGATTCCTCCTCTCAAATAGCTCTGGCTCTTTATAAGACTTTACTGGACGTGTCATCGTATTTTGGATCTTTGGGGCTGACTTTGGAGTTAAACATGAAGCACTCTTCTCTGTTACACTTTGGTCTTTTAACGGTTCCTGAGTATACATATCTTCTGTAGACAGAGAAGCTGAAGAACCATCATTGTTCTTTCCACAAATGCTCCTGTGCATCTGAAAGTTGTCATGAGAATATTGCTGTGTCTGATCCCTGTGAAGCAGACTTTCAGGGATTTCTTCAGGCCCGTCAGCAGTCGTACAGCCACGCGTTACGGCTTTGCTGCTGTCTTTTTGTGTATTGGTTACGTTTTCAATTTTAATATTCTCATGAGGTTTCCTCTTTCCTGGTGGCTCACACTCCTCTGACTGATATCCCCAAATCAAATGTAAAAACTGCTTctctttatcatcatcattacagaCTTCGCCTGACACTCTCTCAATATCTGCATCATATTCCTGTGGCTCTATTAGAGAGGAATGTCCGCTTACGTCGTCTAGTTCTGAAGGCAATTCAAATATCATCTCACGTTTTCGTTTAGTCCCCGCATGTGCTTCAGGAAGGGGAGTAGAAGACATTCCTGAAGGCCACGGACAGCTGCAGTCATCTGCATCTAAGGGCAAGAAATAATTTTGTAGTCAATAAGCATTCAGATAAACAGGTtagaggtgaaaaaaaatatatatatatataaaaatacatatctG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407118 True 1593 lncRNA 0.39 2 14159837 14161453

Neighbor

gene id symbol gene type direction distance location
cap2 cap2 coding upstream 1132 14128893 ~ 14158705 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding upstream 38239 14111423 ~ 14121598 (+)
stmnd1 stmnd1 coding upstream 51401 14101369 ~ 14108436 (+)
utp23 utp23,LOC102791607 coding upstream 131856 14024374 ~ 14027981 (+)
lrrc14b lrrc14b coding upstream 1029448 13126153 ~ 13130389 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding downstream 4446 14165899 ~ 14170688 (+)
mapk15 mapk15 coding downstream 10334 14171787 ~ 14183687 (+)
grinaa grina,LOC102211845,LOC101487737,LOC107654720,LOC107706230 coding downstream 24598 14186051 ~ 14202604 (+)
LOC113535912 tpmt coding downstream 533724 14695177 ~ 14701786 (+)
LOC113535988 ext1,ext1c,LOC107706241,LOC107654729,LOC107592945,LOC107688378 coding downstream 542291 14703744 ~ 14754416 (+)
G343671 NA non-coding upstream 81296 14076457 ~ 14078541 (+)
G343620 NA non-coding upstream 165518 13969234 ~ 13994319 (+)
G343522 NA non-coding upstream 393236 13763084 ~ 13766601 (+)
G342836 NA non-coding upstream 858034 13301539 ~ 13301803 (+)
G342735 NA non-coding upstream 1011991 13147045 ~ 13147846 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding downstream 166741 14328194 ~ 14329982 (+)
G343841 NA non-coding downstream 384146 14545599 ~ 14545807 (+)
G343846 NA non-coding downstream 461053 14622506 ~ 14622728 (+)
G343847 NA non-coding downstream 464110 14625563 ~ 14625822 (+)
G343852 NA non-coding downstream 483599 14645052 ~ 14645287 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 1078608 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1205112 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1367364 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 1464325 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 2344564 11810109 ~ 11815273 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 44268 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 72064 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 1197340 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 1272669 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2556018 16717471 ~ 16732200 (+)

Expression


Co-expression Network