G343852


Basic Information

Item Value
gene id G343852
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14645052 ~ 14645287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407293
GTCCGAGGAGAATGtacagactggttcgagctgacaggaaggctatgataactcaaaaaaaaaacactctttacaaaagtggagagcagaaaagcatctcagacgtgccacagtgggcacaggctcaccaaaactggacagctgaagactggaaaaacctCACCTGATCTAACTGCCTGAacgagcaggtgttcctattaaagtggcccgTGAGTTTATACATTATCCAGAAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407293 True 236 lncRNA 0.45 1 14645052 14645287

Neighbor

gene id symbol gene type direction distance location
grinaa grina,LOC102211845,LOC101487737,LOC107654720,LOC107706230 coding upstream 442448 14186051 ~ 14202604 (+)
mapk15 mapk15 coding upstream 461365 14171787 ~ 14183687 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding upstream 474364 14165899 ~ 14170688 (+)
cap2 cap2 coding upstream 486347 14128893 ~ 14158705 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding upstream 523454 14111423 ~ 14121598 (+)
LOC113535912 tpmt coding downstream 49890 14695177 ~ 14701786 (+)
LOC113535988 ext1,ext1c,LOC107706241,LOC107654729,LOC107592945,LOC107688378 coding downstream 58457 14703744 ~ 14754416 (+)
ncdn ncdn coding downstream 117250 14762537 ~ 14770445 (+)
tfap2e tfap2e coding downstream 127995 14773282 ~ 14785593 (+)
ago4 LOC106511154,LOC103043810 coding downstream 184886 14830173 ~ 14850161 (+)
G343847 NA non-coding upstream 19230 14625563 ~ 14625822 (+)
G343846 NA non-coding upstream 22324 14622506 ~ 14622728 (+)
G343841 NA non-coding upstream 99245 14545599 ~ 14545807 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding upstream 315070 14328194 ~ 14329982 (+)
G343690 NA non-coding upstream 483599 14159837 ~ 14161453 (+)
G343872 NA non-coding downstream 143195 14788482 ~ 14788797 (+)
G344085 NA non-coding downstream 254442 14899729 ~ 14901450 (+)
G344101 NA non-coding downstream 277737 14923024 ~ 14923651 (+)
G344102 NA non-coding downstream 282604 14927891 ~ 15003120 (+)
G344105 NA non-coding downstream 295928 14941215 ~ 14948888 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other upstream 394121 14233517 ~ 14250931 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other upstream 413208 14205721 ~ 14231844 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 1563823 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1690327 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1852579 12785837 ~ 12792473 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 713506 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 788835 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2072184 16717471 ~ 16732200 (+)
LOC117595886 NA other downstream 2691784 17337071 ~ 17338234 (+)
G345390 usp31,LOC107550315,LOC107741795 other downstream 2910797 17556084 ~ 17558253 (+)

Expression


Co-expression Network