G343841


Basic Information

Item Value
gene id G343841
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14545599 ~ 14545807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407282
gtcaatatttggtgtgacgatccttagctttaaaaaaaaatagtagtctcaggtacagtgtgtgcagttttataaggaaatgagctgtaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcacacttgcttcttatttttgcagcaaaacccagcagccttcattatgtttttttgtctgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407282 True 209 lncRNA 0.38 1 14545599 14545807

Neighbor

gene id symbol gene type direction distance location
grinaa grina,LOC102211845,LOC101487737,LOC107654720,LOC107706230 coding upstream 342995 14186051 ~ 14202604 (+)
mapk15 mapk15 coding upstream 361912 14171787 ~ 14183687 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding upstream 374911 14165899 ~ 14170688 (+)
cap2 cap2 coding upstream 386894 14128893 ~ 14158705 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding upstream 424001 14111423 ~ 14121598 (+)
LOC113535912 tpmt coding downstream 149370 14695177 ~ 14701786 (+)
LOC113535988 ext1,ext1c,LOC107706241,LOC107654729,LOC107592945,LOC107688378 coding downstream 157937 14703744 ~ 14754416 (+)
ncdn ncdn coding downstream 216730 14762537 ~ 14770445 (+)
tfap2e tfap2e coding downstream 227475 14773282 ~ 14785593 (+)
ago4 LOC106511154,LOC103043810 coding downstream 284366 14830173 ~ 14850161 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding upstream 215617 14328194 ~ 14329982 (+)
G343690 NA non-coding upstream 384146 14159837 ~ 14161453 (+)
G343671 NA non-coding upstream 467058 14076457 ~ 14078541 (+)
G343620 NA non-coding upstream 551280 13969234 ~ 13994319 (+)
G343522 NA non-coding upstream 778998 13763084 ~ 13766601 (+)
G343846 NA non-coding downstream 76699 14622506 ~ 14622728 (+)
G343847 NA non-coding downstream 79756 14625563 ~ 14625822 (+)
G343852 NA non-coding downstream 99245 14645052 ~ 14645287 (+)
G343872 NA non-coding downstream 242675 14788482 ~ 14788797 (+)
G344085 NA non-coding downstream 353922 14899729 ~ 14901450 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other upstream 294668 14233517 ~ 14250931 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other upstream 313755 14205721 ~ 14231844 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 1464370 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1590874 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1753126 12785837 ~ 12792473 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 812986 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 888315 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2171664 16717471 ~ 16732200 (+)
LOC117595886 NA other downstream 2791264 17337071 ~ 17338234 (+)
G345390 usp31,LOC107550315,LOC107741795 other downstream 3010277 17556084 ~ 17558253 (+)

Expression


Co-expression Network