G343723 (extl1,LOC102196503,LOC101464589,LOC102793765)


Basic Information

Item Value
gene id G343723
gene name extl1,LOC102196503,LOC101464589,LOC102793765
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14328194 ~ 14329982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407155
TGTCCCGATCACAGCGTGCATCCTTGTGCTTCTGCCAGTCTTTCCCATGTTTACATGTGGTCAGGAGAACCACATCTTCTGCGTTATGAACATGATACAAAGCGTTCCTTGTGTCCGAGCCAATCCCGGTGAGATAGCGCTTGCCCTTGAAGACAAGCATGTACTTCCGAAAGGGTGGGATAGTGTTGTACTTGAGGAATCCCCTCTCACCACCAGTTTTTGGATGCTCCTTTGGAAAAAGTGGGATGGACACGTCGAAGCGTGGTCGAAAGGTCTCTGTGCTGATGCTGGCCTTGGCTAACATGGCCTGGCCGATGTCAAAACCCAGGTCCTCCGTGTAGTCGGGCCAGGTGCCCGAGTACAAGTTGAAGATCAGGTGGTTCCTGCCGTCGTTCCACAGCGGCAGGCTCTGCACCTTGGCGCGCAGGTTGTGCACATAATGCGGGGAGAGCTGGTCCCGGTCCAACGTGTCCAAGCTCAGCACGAAGACACACGCCTGCCCCGGGTCGGACGTGTAAAAGCGAGAGGTCTCGATAGCAGCCAAAATGTTCTGGTAGCTCTCGGAGATCTTCTCGCCCTTCTGCTGCGGGTACACGTACACCTTGAAGCCGTTCCGGCGACATAGCGAGAAGTCGAAGCACGAGTCCATGCGGCAGCGCTTGCCCTTATACACGCTGGCGTGCACGTCCCGCTTTTGCCTGGGAGACGTGTGGATATTGTACTCCTCCGTGTCGGTTTGGTCCCACGGGCTGAAGGAGTTTAAGGGGTCGGAGAAGTGTGGCCACGGCTGCTCGGAGCGGCGATGGCCGTGGCGGCTGCGCTCATGCCGGCTCTTTCCGCCCGTGGACACCGGGACGCCCGCCAGGTAaaagagcagcagcaggaaggCGCCGGTGAGCAGCGAAACCAGGTAGCGCTTTTTGGCCTGCATGGGTCCTGAGAGCCGGGCCCTGCGAACGTCTGCGAACAAATCTCGAAGTTTGGCTCTCACCGCCTCCGGCTACTGCCACGCCGCTCCGCCATCTTCCAGCCTGCCAGGATTCCCGAGCCGCCTGAGCTTCCCTCTGCTTCGGATACCGATCCCGTGCCGAGCCGCTGATCCAGCGCATGTGGGCGACTTTACCGGCTATTCCCGCACTCTCCCTCGGCTGACTAGTTGgagcatttcatttcatatctgACCGGGTTGTAAACAAACCTGTTTACAGATAGATCTGTAAACAAACCTGGTGTGTTACTCAGGGATTTCTTTCTCCCATTAAAATCTCACACGTAGCTCGAGTCTGTTTGTCGGTATCTTTGAACTTCCATCGCAGGACACTCTGTTACTTTTAATCCCAGAGGAGCAGAGATTGTTgctgttgatgttgatgatgatgatgatgatgatgatgatgagaggaTTGATCGCTTTCTGTAGGATCACCACGCGTCCCAGCTCTCCTCACACCTCCGCGCACTTCAGCTCCATCAATTCCTTCACTTCATCCTAACGACACTAACCTCACGAATCCCTGCATTATACTCttcttcctttcctctcttCCGATCATCACACGCAAGAAGTAAATCCTTTCATGAGGACGcaggactgagagagagagagagagagaaaggaaccAGCCAGAACACTTGGTGTGTCTTTTATCGCTGGCGGATGGTCCCGGAAAGATGGTGAACCGAGTTGTTCAGTCCTGTCTTCCTAATCACCATTTGCTCAGTTGTTCCGATTGTTACTCTCTTACATTCCAGTCCC

Function

symbol description
extl1 Predicted to enable acetylglucosaminyltransferase activity and glucuronosyltransferase activity. Predicted to be involved in skeletal system development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407155 True 1756 lncRNA 0.54 2 14328194 14329982

Neighbor

gene id symbol gene type direction distance location
grinaa grina,LOC102211845,LOC101487737,LOC107654720,LOC107706230 coding upstream 125590 14186051 ~ 14202604 (+)
mapk15 mapk15 coding upstream 144507 14171787 ~ 14183687 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding upstream 157506 14165899 ~ 14170688 (+)
cap2 cap2 coding upstream 169489 14128893 ~ 14158705 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding upstream 206596 14111423 ~ 14121598 (+)
LOC113535912 tpmt coding downstream 365195 14695177 ~ 14701786 (+)
LOC113535988 ext1,ext1c,LOC107706241,LOC107654729,LOC107592945,LOC107688378 coding downstream 373762 14703744 ~ 14754416 (+)
ncdn ncdn coding downstream 432555 14762537 ~ 14770445 (+)
tfap2e tfap2e coding downstream 443300 14773282 ~ 14785593 (+)
ago4 LOC106511154,LOC103043810 coding downstream 500191 14830173 ~ 14850161 (+)
G343690 NA non-coding upstream 166741 14159837 ~ 14161453 (+)
G343671 NA non-coding upstream 249653 14076457 ~ 14078541 (+)
G343620 NA non-coding upstream 333875 13969234 ~ 13994319 (+)
G343522 NA non-coding upstream 561593 13763084 ~ 13766601 (+)
G342836 NA non-coding upstream 1026391 13301539 ~ 13301803 (+)
G343841 NA non-coding downstream 215617 14545599 ~ 14545807 (+)
G343846 NA non-coding downstream 292524 14622506 ~ 14622728 (+)
G343847 NA non-coding downstream 295581 14625563 ~ 14625822 (+)
G343852 NA non-coding downstream 315070 14645052 ~ 14645287 (+)
G343872 NA non-coding downstream 458500 14788482 ~ 14788797 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other upstream 77263 14233517 ~ 14250931 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other upstream 96350 14205721 ~ 14231844 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 1246965 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1373469 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1535721 12785837 ~ 12792473 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 1028811 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 1104140 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2387489 16717471 ~ 16732200 (+)
LOC117595886 NA other downstream 3007089 17337071 ~ 17338234 (+)
G345390 usp31,LOC107550315,LOC107741795 other downstream 3226102 17556084 ~ 17558253 (+)

Expression


Co-expression Network