G355434 (purb,purba,LOC108425219)


Basic Information

Item Value
gene id G355434
gene name purb,purba,LOC108425219
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14778820 ~ 14781523 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421077
AAGAATTTTTATTTGTCGTTGAAAGGAAGTTGGTGGAGTGTTACAGCAGAATGATGTCGACTGAACAGCTGCCTTTTTCATGGGACATGGTACAGAAAAGATCtaaactgaaggcaaaactgaaacGGATTTTAAAACTAGTAGAAAACTGCTATTGCTCCCAGGTGGTGAATATGACAAGGGTTTTAAAGCAAATCCTGAAGAAAGAGTTCACACATCAAGGCTATGTGTGACAAatgtcacagttttaaaattctGCTTGTTCTTCTCtagagaaaatgaaatgtttaataattcagCATACAGTGATCAGAACAGGTACAAAAAGATCAGACAGGGTGCTTGTAAACTGTAACAGACATATACTTTCAAATCTCATGGAAAAGACATGTAGATTGATGAGAAAAGGCTgttctgggagattattgatgTCTTATGCATATTCagatacaaataatacaaaaggctaaaagaaacatttctcctgaagagggatttttttttaagtcaaattGTAGTGAGAAAGGTCACAAAGCATTAAATACTGTTTCGATGTTCTTATCGCCTTATGTCAATAAGGaacatatgaaaaattaaaacaaaaatgagacAGAAGAAATATCCCACTGGATAATTGCATCCAAGAGTTGTTTAAATAAGCCTGTTATAATTGAATCAATTCTATATtcctatatataaatatatttctatatatatttctgtattgcgtgtttaaaaataagcatttaaCCCCTGATGGGTGAGTTTTTACGTTGAATCTAATGTATTTTCCAGTTACACTCAATTCTTTTCAATTCACTAACTTCTAACTTGTAATCGGACAGTCAAACTCAGACAGATACTGAATCCCCGTCACTTCTTGCGACGGTCTAAATCAGGTTAATGTAGCATCCTTTAAAAAATAACGACACTCAGTATCTGTGCTAACTTTTGTAATTTAAGAGTAAAGTGTTAAAGTATCAGTACGTTTTAGGATAATAGTGGCTGTGTGCTTTGTCAACCTTCGACCATCTCTGTaagaatgatttataataatttagtaTGTACATTCAACTGGTTTTGTATTttacatgttaataataatagcaataataataatacatagaAGTAATGTTTAAGGGGGGTGGTGAAATGTTTCATAGCACCTTTTTTTTGTGTCAATGGTCCACATAATGTGTCTGTATATACTGCAAAATGTCCAAGTTTCTGCTTGAACTTTTGAAATTAAATCTTAGCCCATAAATTGGAgccaaaagtaaataaatccattACCAGAGACCTGAAACAAAAGTGAGAAAATCCATGAAACAAACTTCCTGAATAAGCTTGTTGTGAATTTGCTGGTCTTCTGTCTATTATGGCAATGCATACTGTAAATAACCTCAATAAGTAACACTGTATGCTCACATTgtgttcataaacacattaagAACAGGTTTTTTGGTTGGTTTAATTATGCCTTTTCTTACATGCCATTTAAAACAGGTCTGCACCAAAAAAAGGAGCTTTTCACTAACTAGGCCTAgtgcagctagctagctaactagctcgaGAAAAGTCGCTTAActtagcttagctagctagctgtgtgtATGCTTtaaagattctttttttttgtctattttaatTTACGCCATGTTTGTCAGTCACACAACTTTATTCGCGATAGGTGTTTTAGTATTAATGTTCATCATGCACATCCTTTCAAAGTTGTCAAACGCGTGTGTGGACACTAAAGCCCGCTCCTGGGGAGGAGAAATCAGTCGTCGTCCACGTCGTCTCCCTCGGACTCTTCATCCGCTCTCCGCTCGTACATTTTATCTCTCTGCCTCTCCTGGATCTCCTTCATCTCCTCGGCGTAGCGGCAGAAAGCGCCCCCGAACTTGCTCCAGGCTTTAAACGGCACCGTGATCGAGTTCCGGTAGCTGGGCTTCACCTCGCTGACCCGCAGAAACACGCCGTACTTGTTGGCGCCAACGTCGAAGAAGAAGCGCTTCGAGTCCACGGTGATGGACGTGCCCTCGGGCAGCTCGCTGTAGCCGCCGGCGCCGCATCCAGGCCCGGCCAGCTCGTCATCATCGCCCCCGTAGTCGTCTATCAGCTTGGCCAAAGCGTCGCGGAACTCGATTAGTCCCTGAGCCGGGAGGGCGATGGTTTGTCCGGACTGCATGGCCGCCCCAGGGGCCACTCCCCCTCCGATCCCGAACCCCGCGCCGCGGTTGACGGTCTGCCGGATCCTCAGGAACCTCCCGCGCTGGTTCTCCTTCAGATCGAGGTAGTATTTCCGATTTTCCCTCACCAAGAACTCGCTCTTCAAGGCCCGTCTTGGACCACCGTCCTCCCCGCCCGAGGACTGTGCGATCTGCTCCGGGGTGCTAGGCCCGAGCTGGGCGTAGTGCTCGATGAAGTCGCCCAAGTAGTCGCGGAATTCCGCCGCCACCGACATGGACAGAGTCAGGCGACTTTTGGAGCCCCCGGCGCCGACCTCGGCGATCTTCACGAACCGGCCCTTCGAGTTCTGCTTCACGTCCAAGTAGAAACGCTTGTTCTGGATGTCCAGGCGTTTGGAGGCCAGCTCCTGGGTCTCTTCTTGATCCCGCTGGAAATGGGGGAATCCGctgcctcctccacctccaccaccgcTGCTTCCACCGCGCTCACTCCCACTATCCCCATCCGCCAT

Function

symbol description
purba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURB (purine rich element binding protein B).
purb Enables RNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421077 True 2704 lncRNA 0.44 1 14778820 14781523

Neighbor

gene id symbol gene type direction distance location
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding downstream 1015 14773130 ~ 14777805 (-)
cfap77 cfap77 coding downstream 56122 14705927 ~ 14722698 (-)
barhl1a LOC108256006,LOC100049373 coding downstream 73743 14701210 ~ 14705077 (-)
spaca9 NA coding downstream 126777 14647609 ~ 14652043 (-)
grin1b grin1,grin1b,LOC107681230,LOC107709703,LOC107757976,LOC107597863,LOC105891600 coding downstream 153776 14595957 ~ 14625044 (-)
LOC113537164 NA coding upstream 20995 14802518 ~ 14805253 (-)
ckap2l LOC108255521 coding upstream 26350 14807873 ~ 14825591 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding upstream 47682 14829205 ~ 14862572 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding upstream 84641 14866164 ~ 14886061 (-)
tctn2 tctn2 coding upstream 106859 14888382 ~ 14903274 (-)
G355413 NA non-coding downstream 32874 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 71899 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 181374 14597153 ~ 14597446 (-)
G354930 NA non-coding downstream 602614 14175918 ~ 14176206 (-)
G354893 trafd1 non-coding downstream 697424 14067786 ~ 14081396 (-)
G355456 NA non-coding upstream 25528 14807051 ~ 14807352 (-)
G355724 NA non-coding upstream 166431 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 168012 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 171693 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 187835 14969358 ~ 14971217 (-)
mrpl41 mrpl41 other downstream 1053962 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4029982 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4261615 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4367134 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 4964404 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 127273 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 798947 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 1051530 15833053 ~ 15841684 (-)
G356331 NA other upstream 1358266 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1633166 16414689 ~ 16442957 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030898 purba coding NC_007116.7 CM002889.2 13643167 ~ 13646054 (-)