LOC117595933


Basic Information

Item Value
gene id LOC117595933
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14969358 ~ 14971217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421465
catgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagagaatGAGTGGTGGTTGTTTAGGGTAATGTGATGAGTCATGGTTGGTGTAACTGGCTGATCTATAGCCTACAGTTCATCAGTATTCTACACTGATCCAcgacacatcacacaccacagcaTGAGAGAAGCGCAATCACAGACGAGTCCCGCTCCTCGCAAAAGGACAGATGGAGAGGAAAagcaggaggagagagatgTGGATGAACACATATACGATTCTGCCTTTCTGCATGGAGGTGATGCTAAAGCAAAtgACATCCTGCACTCCGTTTGACCCTGCATttcacagaagagtggaagaATGTGAAGGAGCCTCTGTCTCTGCCTGAAGGCCAGAGCACCTTACAGCTCCTTGTGAAGAGACttgagcatgcacacacacacacacacacacacacacacatgcaaaagtCAGCACATGCATATCCATGcacaaacatgcacatatgTTTTCACCTTCACTTATAACAGCATTCCAGTAGGACAGTATGaca
>XR_004577122.1
GATCTATAGCCTACAGTTCATCAGTATTCTACACTGATCCAcgacacatcacacaccacagcaTGAGAGAAGCGCAATCACAGACGAGTCCCGCTCCTCGCAAAAGGACAGATGGAGAGGAAAagcaggaggagagagatgTGGATGAACACATATACGATTCTGCCTTTCTGCATGGAGGTGATGCTAAAGCAAAtgACATCCTGCACTCCGTTTGACCCTGCATttcacagaagagtggaagaATGTGAAGGAGCCTCTGTCTCTGCCTGAAGGCCAGAGCACCTTACAGCTCCTTGTGAAGAGACttgagcatgcacacacacacacacacacacacacacacatgcaaaagtCAGCACATGCATATCCATGcacaaacatgcacatatgTTTTCACCTTCACTTATAACAGCATTCCAGTAGGACAGTATGacaaaaatctgaaatagttcATTAAACATCTTTACTTGTAAA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU421465 True 543 lncRNA 0.47 2 14969397 14971217
XR_004577122.1 False 477 lncRNA 0.45 2 14969358 14971112

Neighbor

gene id symbol gene type direction distance location
ydjc ydjc coding downstream 31586 14931813 ~ 14937772 (-)
ccl19a.1 NA coding downstream 63358 14904207 ~ 14906000 (-)
tctn2 tctn2 coding downstream 66084 14888382 ~ 14903274 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding downstream 83297 14866164 ~ 14886061 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding downstream 106786 14829205 ~ 14862572 (-)
ppil2 ppil2 coding upstream 127337 15098554 ~ 15141215 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 172968 15144185 ~ 15158018 (-)
pes pes1 coding upstream 190806 15162023 ~ 15177372 (-)
pole pole,LOC107668756 coding upstream 221441 15192658 ~ 15225173 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding upstream 319782 15290999 ~ 15311616 (-)
G355725 NA non-coding downstream 14544 14953216 ~ 14954814 (-)
G355724 NA non-coding downstream 19920 14947954 ~ 14949438 (-)
G355456 NA non-coding downstream 162006 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 187835 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 223412 14731311 ~ 14745946 (-)
G355726 NA non-coding upstream 71088 15042305 ~ 15074193 (-)
G355728 NA non-coding upstream 78233 15049450 ~ 15055786 (-)
G355848 NA non-coding upstream 353270 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 548858 15520075 ~ 15523463 (-)
G356143 NA non-coding upstream 828332 15799549 ~ 15800119 (-)
ccl19a.2 NA other downstream 44699 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1244500 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4220520 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4452153 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4557672 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 609253 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 861836 15833053 ~ 15841684 (-)
G356331 NA other upstream 1168572 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1443472 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1493210 16464427 ~ 16478840 (-)

Expression


Co-expression Network