si:dkey-98f17.5 (si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116)


Basic Information

Item Value
gene id si:dkey-98f17.5
gene name si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 15290999 ~ 15311616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298999.1
actattttatccaaaatgacttACAGTTGcagggggcatggtggcttagtggttagtgcTGTTGCCTCACACATCTGGGAGTTCCTGTTCGGTGTCAACATGTCGGGCAGTAGGAAACCCCGCTCAGTGGCCAACACTTTGGAAACAGCCGTAACCACACCGAGCGAGAGAATTCTCAAAGAATGTCACACTCTTTATATCGACGACGAAAACGGCCTCGTGAAAATAGCCTCCAGGCTGGGCCTGAGATTGCTACCACCTCGGAAGAAGATAATAGTTATGATTATGGGCAATCACTCTGCTGGGAAAAGCTCCTTTATTAACTGGTATGTTGAGGAGCACATTCAGAAAACAGGCGTTGCCATAGAAACGCAAGGGTTCACGTTCGTAACCAGTGGCAGGAAACGAGAATCGCTAACCGGCAATGCCACACTGCATCTTTACCCACATTTCCGACCGCTCCTGGAGTTTAAAGGACTCACGGACTACCTGTCTGCTGAAATCTCCACCTCAAAGCAGAAGAAGTTCAGCCTGGTGACGTTTGTAGACACGCCCGGGCTGGTGGACGGAGATATGGTGTATCCCTTCGACGTCAATGGCGCAATCACGTCTTTTGGCGAGCAGGCGGATCTGATCTTCGTGTTTTTTGACCCGATGGGCCAGGCGCTGTGCAAGCGAACGCTCAACATCGTGGAGAAGCTGAGTGAGAAATGCGGAGACAAATTACGCTTCTACCTCAGTAAAGCTGACGAGGCAGGAcgcgagacagacagacagAGAGTAATGATGCAGATAGTTCAAGAGCTGTGCCGCAGACCAGGACTCAACAAATGCGGCTTTGAAATGCCGACGATATACATCCCCAATCCACAGAGAccGAGCAGGTGCGTGAATCAGATCGAAGAGGTGTGCGAGACAATAGAGAAGAGCATTAACCAGGCGGTGCAGAAGACCTTGGACCAGCTGGAGAAAGACTGTGACCTCATCGCCTCCTCCATCAGCAATAAGCTGGAGCAGGACAGGAGTAATGTGAGCTATAATAAGAGCAGCCGCTTTAACTCCTTCCTGTGTGGGTTTCTGGCCATCTTCCTTCCCGCTGTCTTCATCACCAGCTTTCTCGTCCATACATTTTTCCCAGAGGAGCTAGGAGCCCTGTTGGGGGAGGGGCTTGCCGCAACGCTCTACGTAATTACGAGAATAGTGCTGTATCTGTGGGAGTGGATCCCCGAAGACTGGCAGGTGGTGGCCGTGATCATCTTCGGTGCGATGTGCTACTTCTTCCTTTTCCTCGCCAGGTATTTTGCACGCCAGAGCAGTAAAACTCTCAccaagaaagagaagaagaatcTGATGGAGTGCAGTGAATATGTTAAGGATGTCCTCAAAGCAAAAAAGAAGAAACTCTATGAAGAATATTTGAAGCAGTGTGCAGCCGAATACGACTTCAGATGAACAACGTGGAAGACTGACGAACAAAAGGAATTTCAAAGCAGGAATATGTAGCAAGCACATCTTCAGGTTAAATCTTATGACAGTTCACtattaatgcatatttattatgtgtgtaaacTATATATTTCTCACAGCATATAGGGGTCAGTTGTATGCACTCCAGCTacataaatgacaaaaatactCAGTGCCTTTTTTGTTGAACATGAAAGAATGATCTCAAGAACTTAATACCAGCCTGTATGTATTTTTCCTGCATCTATTTAATTCAGCCAGCAGAATAGTGTTGTTTACAAGTCAATAATCTGCACTGATTTAGTGACTCAAGGTTTTAGTAGATATTTGGAGCCAGATCTCAAGTAAGTAGGCTTGAAAAGCCGATgcgtaaatgtgtgtaaatgacagGATTTGCTTTTTCAGCCACGAAATGGATAGACTGTGACTTTTGATCAAAcaaagctgccttttttttttgagtcagaCTTGCTACTGTCTTTTAgagattatgaacatttatgtgTATCAGGGTTTTGATCTTTTACTTTTCTATATTATGCTGTGATCTTGATCTTAAAGGAAAATCATAGtcattttgctttatttgtatAAGAATATTATAGAACGTTCTATAATACTATTCAAAACTGTACCTTATTCACTGTCGAGTGCACTTAATTTGGGTGCTTTGGCATCTATACTCATAGGTACAGAATACCCATCATGCATATTACTGCCGTAGGTGGTAGAGTTACAGCTGGTTTTACTCTGTGCGATTTCAACAGTTTTTTAAGATTATGACTTGTCACGCTGTATGAGACGatcttggctgaattctataacagtcTGTGCGATAACAcgtccatgtcagattatacgatgaagatcctctaatgatagaaCAGCGATTGTAGAAAATTACTATGTTCTGCTCATCTGTCAGTGTGATCCAGGCTCATGCAGAAAATGGGCTCACATAAATAGACACATTTGTTAGAGTGAGCTTGATGTAATACggatatttatttctgtttattagcaTGCTGCATTTGCATTTCACCATTGTCACTAGTGTATTTGTAACCATCTTGTGAGTTGAGTGATCCTACGCCATCCTcttattggtggcttttagatgagtGTCATAACAGCGCTCACGCTCGCAGAGATTTTAATCGAAAATGTCTACCACTGCCAGAACTTGGTCGTCGAATGCCTTTGGTCCTAATGGCATTAAATTGGACACCAGATCTCAACTCATGAGctaagaattatttttattacaatgtGCAAATTTGTCCATGACGGCAAAATCAGGACGAAAAACACAGTGTAAATCTGGCTTAAGACATGACAAAACAACATGAAGCCTGTGTTAGGATTTAAACAATGAAACCATGTTgaaatgctgatgtggtttagtcACAACTGCCAACCAGTTGatagcacaatgtataaaacgAAATACCATTTTTGTCTGTAGTTACAGTATTAATCCTTGTGTCCTGACTTGTGTTAAATCATGGATTTTTGATTTTTAGTCTCCTTGCACTGCTGATTTTAGAGTTTCCTGCTCATTAAAGCTTATATTTAAGGA
>XM_034299000.1
GCTATAAAACACTATTCAGAAAACAgttttttagtgtttgtttgtttgctttaatgATGAAAAGCAGTAATGGAGGGAATGTTTGTTCATTAGAGCATATAGGCTACTCTCAGGCCTGTTAGTGGAACTTCTAGAAAcctgttatttacatttattcatttgttgtcccatccagggtgtgtctCCACAGCATGAGATCATACACAGTTTCTGGGATTGGCCCCGGATGCAGTGTGACCCTGACCTGATTACTGAAGCTGAAGGAATGAGTTTCTTTTAAGTTCCTGTTCGGTGTCAACATGTCGGGCAGTAGGAAACCCCGCTCAGTGGCCAACACTTTGGAAACAGCCGTAACCACACCGAGCGAGAGAATTCTCAAAGAATGTCACACTCTTTATATCGACGACGAAAACGGCCTCGTGAAAATAGCCTCCAGGCTGGGCCTGAGATTGCTACCACCTCGGAAGAAGATAATAGTTATGATTATGGGCAATCACTCTGCTGGGAAAAGCTCCTTTATTAACTGGTATGTTGAGGAGCACATTCAGAAAACAGGCGTTGCCATAGAAACGCAAGGGTTCACGTTCGTAACCAGTGGCAGGAAACGAGAATCGCTAACCGGCAATGCCACACTGCATCTTTACCCACATTTCCGACCGCTCCTGGAGTTTAAAGGACTCACGGACTACCTGTCTGCTGAAATCTCCACCTCAAAGCAGAAGAAGTTCAGCCTGGTGACGTTTGTAGACACGCCCGGGCTGGTGGACGGAGATATGGTGTATCCCTTCGACGTCAATGGCGCAATCACGTCTTTTGGCGAGCAGGCGGATCTGATCTTCGTGTTTTTTGACCCGATGGGCCAGGCGCTGTGCAAGCGAACGCTCAACATCGTGGAGAAGCTGAGTGAGAAATGCGGAGACAAATTACGCTTCTACCTCAGTAAAGCTGACGAGGCAGGAcgcgagacagacagacagAGAGTAATGATGCAGATAGTTCAAGAGCTGTGCCGCAGACCAGGACTCAACAAATGCGGCTTTGAAATGCCGACGATATACATCCCCAATCCACAGAGAccGAGCAGGTGCGTGAATCAGATCGAAGAGGTGTGCGAGACAATAGAGAAGAGCATTAACCAGGCGGTGCAGAAGACCTTGGACCAGCTGGAGAAAGACTGTGACCTCATCGCCTCCTCCATCAGCAATAAGCTGGAGCAGGACAGGAGTAATGTGAGCTATAATAAGAGCAGCCGCTTTAACTCCTTCCTGTGTGGGTTTCTGGCCATCTTCCTTCCCGCTGTCTTCATCACCAGCTTTCTCGTCCATACATTTTTCCCAGAGGAGCTAGGAGCCCTGTTGGGGGAGGGGCTTGCCGCAACGCTCTACGTAATTACGAGAATAGTGCTGTATCTGTGGGAGTGGATCCCCGAAGACTGGCAGGTGGTGGCCGTGATCATCTTCGGTGCGATGTGCTACTTCTTCCTTTTCCTCGCCAGGTATTTTGCACGCCAGAGCAGTAAAACTCTCAccaagaaagagaagaagaatcTGATGGAGTGCAGTGAATATGTTAAGGATGTCCTCAAAGCAAAAAAGAAGAAACTCTATGAAGAATATTTGAAGCAGTGTGCAGCCGAATACGACTTCAGATGAACAACGTGGAAGACTGACGAACAAAAGGAATTTCAAAGCAGGAATATGTAGCAAGCACATCTTCAGGTTAAATCTTATGACAGTTCACtattaatgcatatttattatgtgtgtaaacTATATATTTCTCACAGCATATAGGGGTCAGTTGTATGCACTCCAGCTacataaatgacaaaaatactCAGTGCCTTTTTTGTTGAACATGAAAGAATGATCTCAAGAACTTAATACCAGCCTGTATGTATTTTTCCTGCATCTATTTAATTCAGCCAGCAGAATAGTGTTGTTTACAAGTCAATAATCTGCACTGATTTAGTGACTCAAGGTTTTAGTAGATATTTGGAGCCAGATCTCAAGTAAGTAGGCTTGAAAAGCCGATgcgtaaatgtgtgtaaatgacagGATTTGCTTTTTCAGCCACGAAATGGATAGACTGTGACTTTTGATCAAAcaaagctgccttttttttttgagtcagaCTTGCTACTGTCTTTTAgagattatgaacatttatgtgTATCAGGGTTTTGATCTTTTACTTTTCTATATTATGCTGTGATCTTGATCTTAAAGGAAAATCATAGtcattttgctttatttgtatAAGAATATTATAGAACGTTCTATAATACTATTCAAAACTGTACCTTATTCACTGTCGAGTGCACTTAATTTGGGTGCTTTGGCATCTATACTCATAGGTACAGAATACCCATCATGCATATTACTGCCGTAGGTGGTAGAGTTACAGCTGGTTTTACTCTGTGCGATTTCAACAGTTTTTTAAGATTATGACTTGTCACGCTGTATGAGACGatcttggctgaattctataacagtcTGTGCGATAACAcgtccatgtcagattatacgatgaagatcctctaatgatagaaCAGCGATTGTAGAAAATTACTATGTTCTGCTCATCTGTCAGTGTGATCCAGGCTCATGCAGAAAATGGGCTCACATAAATAGACACATTTGTTAGAGTGAGCTTGATGTAATACggatatttatttctgtttattagcaTGCTGCATTTGCATTTCACCATTGTCACTAGTGTATTTGTAACCATCTTGTGAGTTGAGTGATCCTACGCCATCCTcttattggtggcttttagatgagtGTCATAACAGCGCTCACGCTCGCAGAGATTTTAATCGAAAATGTCTACCACTGCCAGAACTTGGTCGTCGAATGCCTTTGGTCCTAATGGCATTAAATTGGACACCAGATCTCAACTCATGAGctaagaattatttttattacaatgtGCAAATTTGTCCATGACGGCAAAATCAGGACGAAAAACACAGTGTAAATCTGGCTTAAGACATGACAAAACAACATGAAGCCTGTGTTAGGATTTAAACAATGAAACCATGTTgaaatgctgatgtggtttagtcACAACTGCCAACCAGTTGatagcacaatgtataaaacgAAATACCATTTTTGTCTGTAGTTACAGTATTAATCCTTGTGTCCTGACTTGTGTTAAATCATGGATTTTTGATTTTTAGTCTCCTTGCACTGCTGATTTTAGAGTTTCCTGCTCATTAAAGCTTATATTTAAGGA

Function

symbol description
si:dkey-98f17.5 Predicted to be involved in endocytosis and endosomal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane.

NR:

description
PREDICTED: uncharacterized protein LOC106580116 isoform X2

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298999.1 False 3046 mRNA 0.43 13 15290999 15311321
XM_034299000.1 True 3246 mRNA 0.42 13 15290999 15311616

Neighbor

gene id symbol gene type direction distance location
pole pole,LOC107668756 coding downstream 65826 15192658 ~ 15225173 (-)
pes pes1 coding downstream 113627 15162023 ~ 15177372 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding downstream 132981 15144185 ~ 15158018 (-)
ppil2 ppil2 coding downstream 149784 15098554 ~ 15141215 (-)
ydjc ydjc coding downstream 353227 14931813 ~ 14937772 (-)
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding upstream 25868 15337484 ~ 15345795 (-)
tesca tesc coding upstream 332978 15644594 ~ 15652663 (-)
fbxo21 fbxo21,LOC107726726,LOC102799747 coding upstream 345040 15656656 ~ 15668318 (-)
zgc:112294 LOC108255850 coding upstream 517691 15829307 ~ 15832933 (-)
scarf2 scarf2 coding upstream 535955 15847571 ~ 15884626 (-)
G355726 NA non-coding downstream 216806 15042305 ~ 15074193 (-)
G355728 NA non-coding downstream 235213 15049450 ~ 15055786 (-)
G355732 NA non-coding downstream 264683 14949535 ~ 15026316 (-)
LOC117595933 NA non-coding downstream 319782 14969358 ~ 14971217 (-)
G355725 NA non-coding downstream 336185 14953216 ~ 14954814 (-)
G355848 NA non-coding upstream 12871 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 208459 15520075 ~ 15523463 (-)
G356143 NA non-coding upstream 487933 15799549 ~ 15800119 (-)
G356142 NA non-coding upstream 490169 15801785 ~ 15801940 (-)
G356211 NA non-coding upstream 602249 15913865 ~ 15914335 (-)
ccl19a.2 NA other downstream 366340 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1566141 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4542161 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4773794 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4879313 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 268854 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 521437 15833053 ~ 15841684 (-)
G356331 NA other upstream 828173 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1103073 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1152811 16464427 ~ 16478840 (-)

Expression


Co-expression Network