G368032 (LOC108259384)


Basic Information

Item Value
gene id G368032
gene name LOC108259384
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 18392832 ~ 18393224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU435908
AGTAGTGAGGATGCAGGCAGCTACTCCTGTGCTGTAAGAGGACATGAGGAGCTTCGCTCTCCTGCTGTCTgtGTTTTTGATGAGAAGAGCTGCTGGAGTGTGACTTACTCCACCCAGACtatctgctctctgattggctcatcAGTGGACATACTGAGTTACTATACCTTTCCTAACAatcagaaaatgacaaaagtgTTCTGGTTCATTAAAGAGCAGGCTGATGCTGAGGCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435908 True 237 lncRNA 0.47 2 18392832 18393224

Neighbor

gene id symbol gene type direction distance location
LOC117595709 LOC108259247 coding downstream 50737 18340431 ~ 18342095 (-)
ahr1b LOC108259166 coding downstream 93206 18280255 ~ 18299626 (-)
LOC113524281 LOC108259515 coding downstream 118228 18269981 ~ 18274604 (-)
mfsd6a LOC108259489 coding downstream 124576 18258060 ~ 18268256 (-)
glsa glsa,LOC107586966,LOC107687871,LOC107754246,LOC103374344,LOC101068604 coding downstream 137940 18237114 ~ 18254892 (-)
LOC117596054 LOC108259445,LOC108259384 coding upstream 44155 18437379 ~ 18460520 (-)
LOC117596042 NA coding upstream 158098 18551322 ~ 18568989 (-)
cntnap5b LOC108259481,LOC108411251 coding upstream 204539 18597763 ~ 18653103 (-)
si:ch211-246m6.4 LOC108259532,LOC108414346 coding upstream 447593 18840817 ~ 18845677 (-)
LOC113524274 LOC108259477 coding upstream 499757 18892981 ~ 19046627 (-)
G368030 NA non-coding downstream 15892 18358367 ~ 18376940 (-)
G368029 NA non-coding downstream 17719 18357480 ~ 18375113 (-)
G368028 NA non-coding downstream 19860 18356354 ~ 18372972 (-)
G368022 NA non-coding downstream 75283 18317251 ~ 18317549 (-)
G367995 NA non-coding downstream 158716 18232720 ~ 18234116 (-)
G368033 LOC108259396,LOC108259407,LOC108259445,LOC108259411,LOC108259384 non-coding upstream 8649 18401873 ~ 18410065 (-)
G368034 NA non-coding upstream 17647 18410871 ~ 18411155 (-)
G368035 LOC108259396,LOC108259411,LOC108259407 non-coding upstream 19096 18412320 ~ 18413332 (-)
G368043 NA non-coding upstream 79794 18473018 ~ 18477589 (-)
G368062 NA non-coding upstream 139860 18533084 ~ 18547721 (-)
LOC117596063 NA other downstream 165053 18198642 ~ 18227779 (-)
mettl21a mettl21a,LOC108415896,LOC107663696 other downstream 364853 18025208 ~ 18027979 (-)
G367947 NA other downstream 460147 17930798 ~ 17932685 (-)
G367877 bcor,LOC108444103,LOC107586940 other downstream 677983 17664734 ~ 17714849 (-)
LOC117596081 NA other downstream 766828 17621639 ~ 17626004 (-)
LOC117596053 LOC108259411,LOC108259445 other upstream 34237 18427461 ~ 18434861 (-)
s100b s100b,LOC108259544 other upstream 308678 18701902 ~ 18729461 (-)
si:ch211-246m6.5 NA other upstream 460484 18853708 ~ 18889071 (-)
LOC113524312 LOC108259540 other upstream 783138 19176362 ~ 19315458 (-)
mfng LOC108259517 other upstream 819854 19213078 ~ 19235186 (-)

Expression


Co-expression Network