LOC117595709 (LOC108259247)


Basic Information

Item Value
gene id LOC117595709
gene name LOC108259247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 18340431 ~ 18342095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299550.1
GATTCACCTCAGAGGTTGCAGCTGTGCTATATCTGTTTCATagaaaaaatgaatcaaccaatcagattcaagcattcagcagtgctgtagtataaaaagTGGTCAGCTGTGAACGCCTTGTATTTTTCTTGTAAATTTGCACTTTAATACTGTGGAGGGGACGTGCATGATGGTGCTTTTCAGTACATAAAGAGTGGAGgagattttagaaaaaaaaaaatgtggtcagAGCGCTTCCGCTCTCCTGCATCTAAAACACAACTGAAGTGTTTCCTGACTGAAGCAGAACGATTTCAGAGTGCTTGTGAACAGTGTTCCAGCTTCAGCATGAAGATTGTGCTTTGGTTCTaTCTACTTGTGTGCTGTGGAGCTACAGAAAGTTTCACAGAGAAGTCGGTAGATTTGGGACAAAATGTGACTCTAAAGTGTGAGGTGTCTGTAAAAAATGTGTACTGGTTCCTGATGAAGCCGTCAGAACCTCCACTGTTTATATTACGctctttctcaagtattatCCTGGTGCCAGAATACAGTAACGCGACCTTCAGCAAGAGATTCTCACTGCAATATAACAGCAGtttatttatacacaatatCAGTACTAATGAATTAGGAGTGTATTATTGTATTCAAACTGGTTCACCTCCCGACATCAGCAGTGGAATCAGACTTTACACCCAGAATCACTTAGCTGAGAATCAGACAGCCGATAAACATGAAGATAAAGAAACCAGCCTCATGCCGATTCTCATCATATCAGGAATAATGAACTGTGCTCTGGTCGTTGCAGTTACAGGTGGGTTTAATTTACTGTGTATTCTGGTGATGTGGCAGTAATTGAGAATATACTGAGAGTGTACTTCTGCACAACTGAAAATACAAATCTGTAATTCTGATCACTCTAATAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299550.1 True 910 mRNA 0.40 3 18340431 18342095

Neighbor

gene id symbol gene type direction distance location
ahr1b LOC108259166 coding downstream 40805 18280255 ~ 18299626 (-)
LOC113524281 LOC108259515 coding downstream 65827 18269981 ~ 18274604 (-)
mfsd6a LOC108259489 coding downstream 72175 18258060 ~ 18268256 (-)
glsa glsa,LOC107586966,LOC107687871,LOC107754246,LOC103374344,LOC101068604 coding downstream 85539 18237114 ~ 18254892 (-)
cnot9 cnot9,rqcd1,LOC106575212,LOC106574282,LOC105022524 coding downstream 146598 18187901 ~ 18193833 (-)
LOC117596054 LOC108259445,LOC108259384 coding upstream 95284 18437379 ~ 18460520 (-)
LOC117596042 NA coding upstream 209227 18551322 ~ 18568989 (-)
cntnap5b LOC108259481,LOC108411251 coding upstream 255668 18597763 ~ 18653103 (-)
si:ch211-246m6.4 LOC108259532,LOC108414346 coding upstream 498722 18840817 ~ 18845677 (-)
LOC113524274 LOC108259477 coding upstream 550886 18892981 ~ 19046627 (-)
G368022 NA non-coding downstream 22882 18317251 ~ 18317549 (-)
G367995 NA non-coding downstream 106315 18232720 ~ 18234116 (-)
G367961 NA non-coding downstream 134944 18202899 ~ 18205487 (-)
LOC117596040 LOC108259491,LOC108411587,LOC103363317,LOC101175056 non-coding downstream 174914 18154463 ~ 18165517 (-)
G368003 NA non-coding downstream 180304 18147721 ~ 18160127 (-)
G368028 NA non-coding upstream 14259 18356354 ~ 18372972 (-)
G368029 NA non-coding upstream 15385 18357480 ~ 18375113 (-)
G368030 NA non-coding upstream 16272 18358367 ~ 18376940 (-)
G368032 LOC108259384 non-coding upstream 50737 18392832 ~ 18393224 (-)
G368033 LOC108259396,LOC108259407,LOC108259445,LOC108259411,LOC108259384 non-coding upstream 59778 18401873 ~ 18410065 (-)
LOC117596063 NA other downstream 112652 18198642 ~ 18227779 (-)
mettl21a mettl21a,LOC108415896,LOC107663696 other downstream 312452 18025208 ~ 18027979 (-)
G367947 NA other downstream 407746 17930798 ~ 17932685 (-)
G367877 bcor,LOC108444103,LOC107586940 other downstream 625582 17664734 ~ 17714849 (-)
LOC117596081 NA other downstream 714427 17621639 ~ 17626004 (-)
LOC117596053 LOC108259411,LOC108259445 other upstream 85366 18427461 ~ 18434861 (-)
s100b s100b,LOC108259544 other upstream 359807 18701902 ~ 18729461 (-)
si:ch211-246m6.5 NA other upstream 511613 18853708 ~ 18889071 (-)
LOC113524312 LOC108259540 other upstream 834267 19176362 ~ 19315458 (-)
mfng LOC108259517 other upstream 870983 19213078 ~ 19235186 (-)

Expression


Co-expression Network