ugdh (ugdh,LOC107757604)


Basic Information

Item Value
gene id ugdh
gene name ugdh,LOC107757604
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10906335 ~ 10916213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301072.1
gtgtgtgtatgtgtatgtgtgtgtgagagagtgtatatatgtgtgtgtgtgtgagagagtgagagaaaaagaagtcaCTCGGCGCAACAGTagtgttattcattcattagaaGGTGTTCAGAGAAGCAGCAGCTGAAACGCTGCACATTAGAGCCACAGCAGCTCTCAGCTCTCCATCCGGCAACAGCTAGCTGCACTTCAGCAACTATCTTcccttcacttcactttaaagCACGatGGTTCAGATTAGGAAAATATGCTGCATAGGTGCTGGTTATGTCGGGGGGCCAACGTGCAGCGTCATCGCCAGCATGTGTCCCGAGATTACAGTGACCGTGGTCGATGTGAACGAGACCCGAATCAAAGCCTGGAACTCGGACACACTTCCCATTTATGAGCCTGGCCTGAACGAGGTTGTGTTGTCGTGCCGTGGcaagaacctttttttctccactgacATCGACTCAGCCATCAAGGAAGCAGACTTGGTCTTCATTTCGGTCAACACACCCACTAAGACGTACGGGATGGGAAAGGGCCGAGCGGCTGATCTGAAGTTCATCGAGGCATGCGCACGGCGGATTGTGGAGGTCTCCGATGGTTATAAGATAGTGACGGAGAAAAGCACGGTGCCTGTGCGAGCTGCCGAGAGCATCCGCAGGATCTTCGACGCCAACACCAAACCCAGCCTCAacctacagGTGCTTTCCAACCCAGAGTTTCTTGCTGAAGGGACGGCTGTGAAGGACCTCAAGGAGCCGGACCGTGTTTTGATTGGTGGAGATGAAACTCCTGAAGGTCAAAAGGCGATCAGGGCGCTATGCGAAGTGTATGAGCACTGGGTGCCTGAGTCACGCATCATCACCACCAACACATGGTCATCCGAGCTGTCCAAATTAGCGGCGAATGCATTCCTAGCTCAACGTATCAGCAGTATAAACTCCATCTCGGCTCTGTGTGAGTCCACCGGCGCTGACGTGGAGGAGGTGGCCAGAGCCATCGGCATGGACCAGCGCATCGGCAACAAGTTCCTCAAGGCCAgcgtggGCTTTGGAGGAAGCTGTTTCCAGAAGGACGTGCTGAATTTGGTGTATCTGTGTGAGGCACTGAATCTGCCTGAAGTGGCCTCTTACTGGCAGCAGgtgattGATATGAACGAGTACCAGAGGAAAAGGTTTGCATGCAGGATCATCGACTGTCTCTTTAACactgtaacaggaaaaaaaattgctttgctAGGCTTCTCATTCAAGAAGGACACTGGGGACACcagAGAGTCATCCAGTATCTATATTTCTAAATATCTGATGGATGAAGGAGCCAAGCTGCACATCTTTGATCCTAAAGTGGCAAAAGAACAGATCATACAGGACCTGTCCCAGCCCAGCATCTCAGGAGACAATcctgagagagTATCTGAGCTGGTCACTGTGTCGTCAGATCCTTATGAAGCCTGTAAAAGTGCGCATGCACTAGTCATCTGCACTGAATGGGACATGTTTaaggaTCTGGATTACGAGAAGATTTATCACCAGATGTTGAAGCCAGCGTTCATATTCGATGGCCGCAGAGTCCTTGATCATTTACACCCCCAACTACAGAACCTTGGtttccagATTGAGACGATTGGAAAGAAGGTGATGACCAGGCTTCCTTTCACCCCCACGGGTGCAGTCCCCAGAATCACCCTCACCGAGCCACCGACTAAAAAATCCAAAGTCTGAGACGCGCGTGTATACACACACGACACCATGTCTACCGagacgaacacacacactcagattgGATTTACTGCATTTCTCTAAAAAAGAGCCAAAGTTCAAAAATGATGCACATTTTACTGTTGAGTTTGTAATTCACCTGTCACAGGACACCGTGTCTGTATCCCTCTACAGCACACTGCACTGGATAGCAGTCAAGAATtatgcagatttttatttttttttaattcagtagaCATGCCTTTCAACGTGACAATGATGTTTAGTTTTTCAGTATTAATTCTGATCATTACATGGTGCAGCACTGAAAAGAGAAATGTTGTCATGAGCATCTAATTACAGTGAAAAAGCAAATGCTTCCGAGTCTTTCAGCAGAGCCATTAGTCCATTTTTCTATAGTGTGATTGCGGTTAAATCATAATGTAATCGTGTCATGTGATATACGTGTGTACTAGTTTAATgtgaacttttttaaaaataaaatcatttcatattGTACAGATTTGTAACACTAATGTAATATGATAAAAGGCAACAATTTCTTACATACGTATGGACCAATTAAAAGCATATCttattttcacaaaataaaataaatgaacaaa

Function

symbol description
ugdh Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Acts upstream of or within atrioventricular valve formation; determination of left/right symmetry; and positive regulation of signal transduction. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including axis; head; heart tube; mesoderm; and vestibuloauditory system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).

NR:

description
PREDICTED: UDP-glucose 6-dehydrogenase

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301072.1 True 2326 mRNA 0.46 12 10906335 10916213

Neighbor

gene id symbol gene type direction distance location
pds5a pds5a,LOC107757607 coding upstream 33772 10839185 ~ 10872563 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding upstream 156778 10746707 ~ 10749557 (+)
haspin gsg2,LOC108416162 coding upstream 570273 10308993 ~ 10336062 (+)
LOC113544364 col19a1 coding upstream 1032161 9613328 ~ 9874174 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding upstream 1446230 9254662 ~ 9460105 (+)
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding downstream 14128 10930341 ~ 10935261 (+)
rfc1 rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304 coding downstream 21015 10937228 ~ 10961204 (+)
adgrl3.1 adgrl3.1,LOC108260566,LOC108437730,LOC107702411 coding downstream 122754 11038967 ~ 11216849 (+)
qdprb1 dhpr,qdpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 354313 11270526 ~ 11292889 (+)
ldb2b ldb2b,LOC108260957,LOC108434309,LOC107548319,LOC107750444,LOC107671914,LOC107562611 coding downstream 384565 11300778 ~ 11322564 (+)
LOC113544427 NA non-coding upstream 28442 10876855 ~ 10877893 (+)
G395437 NA non-coding upstream 94613 10810534 ~ 10811722 (+)
G395429 NA non-coding upstream 124486 10781606 ~ 10781849 (+)
G395423 NA non-coding upstream 138212 10767606 ~ 10768123 (+)
G395420 NA non-coding upstream 156027 10749977 ~ 10750308 (+)
G395474 NA non-coding downstream 59203 10975416 ~ 10975628 (+)
G395568 NA non-coding downstream 303641 11219854 ~ 11220065 (+)
G395818 NA non-coding downstream 494919 11411132 ~ 11412521 (+)
G395838 NA non-coding downstream 527432 11443645 ~ 11443866 (+)
G395863 rbm47 non-coding downstream 740377 11656590 ~ 11660349 (+)
smim14 smim14,LOC107700293,LOC107757606 other upstream 921 10897933 ~ 10905414 (+)
G395365 NA other upstream 244632 10660946 ~ 10661703 (+)
G395242 NA other upstream 389966 10506590 ~ 10516369 (+)
LOC113544300 NA other upstream 667136 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 789411 10100937 ~ 10116924 (+)
smim18 smim18 other downstream 345285 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 435973 11352186 ~ 11403274 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other downstream 612340 11528553 ~ 11552542 (+)
G396005 NA other downstream 1180758 12096971 ~ 12102765 (+)
LOC113547319 NA other downstream 2239063 13155276 ~ 13160354 (+)

Expression


Co-expression Network